Gene detail

Detail information of GWHGAAZE001940

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008229590.1	3.4809E-171	PREDICTED: WD repeat-containing protein 26-like [Prunus mume]
COG	YP_007064635.1	5E-31	WD40 repeat-containing protein
Swissprot	tr\|Q6S7B0\|TAF5_ARATH	5E-17	Transcription initiation factor TFIID subunit 5
trEMBL	tr\|A0A061DKA2\|A0A061DKA2_THECC	2E-171	Transducin family protein / WD-40 repeat family protein isoform 2 {ECO:0000313\|EMBL:EOX93085.1}
TAIR10	AT5G08560.2	6E-121	transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	65180047	65185132	-
GWHAAZE00000001	mRNA	65180047	65185132	-
GWHAAZE00000001	exon	65180047	65180271	-
GWHAAZE00000001	exon	65182684	65183313	-
GWHAAZE00000001	exon	65184834	65184935	-
GWHAAZE00000001	exon	65185118	65185132	-
GWHAAZE00000001	CDS	65185118	65185132	-
GWHAAZE00000001	CDS	65184834	65184935	-
GWHAAZE00000001	CDS	65182684	65183313	-
GWHAAZE00000001	CDS	65180047	65180271	-

Transcript Sequence
>GWHTAAZE001944 ATGTGTTTTGACAAAATACTAGAAGAACACACTGATGAAGTCTGGTTCTTGCAATTTTCACATAATGGGAAATACTTGGCGTCATCATCTCGTGATCGCTCAGCAATTATATGGGAGGTTAATGTGGACGGTAGACTTTCATTAAAACATAGATTATTGGGTCACGAGAAACCCGTATCCCATATTTCATGGAGCCCCGATGACCATCAACTCCTCACTTGCGGAGTAGAAGAGACTATTAGACTCTGGGACGTTTTATCTGGCAAATGTCTTCACATTTATGACAAAAGCGGCCTCGGCATGATTTCATGTGGATTTTCTCCGGATGGTAAATGGGTATTCTCGGGTGTGTCTGATAAAAGCATTAGCATTTGGGGTTTGGATGGTACAGAGCTTGAATGTTTGAAAGATCAACGGACCATAATGATCTCGGACTTGGAAGTAACAAATGATGGGAAACAAATAATTACTATTTGTAGGGAAACTGTGATATTATTACTCGATAGAGAATCGAAAGCTGAGAAGTATATTGTGGAGGATCACTTAATAACATCATTCTCTTTGTCGAGGGACAATAAATTCTTGCTGGTTAGTCTAATGAATCAAGAAATCCATCTTTGGAACATAGAGGGGCCTATAAAGCTTGTTTCCAAGTACAAAGGTTACAAACGTTCTCGGTTTGTTGTTAGAGCTTGTTTCGGTGGACTTGGTCAAGCATTTGTTGCTGGTGGCAGCGAGGATTCTCAGGTATATGTATGGTTTAGAGACTCGGGCGAGCTCATAAAGAAATTGCAAGGTCATTCCGGAGCTGTCAACTCGGTTAGCTGGAATCCAGCAAACCTTCATATGTTGGCATCGGCTAGTGATGACCGTACGATTCGAATATGGGGTCTAAATCAGGTCAACATGAAGCAAAAAGGGATAATACAGAGCAATGGTGTCCACTATTGCAATGGTGGAACTCACTCTTGA

Network for GWHGAAZE001940

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	5	38	0.00015
PF00400.33	WD40	49	84	1.50E-05
PF00400.33	WD40	88	125	0.0002
PF00400.33	WD40	258	296	3.20E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.436
	SRR3591706	second leaf	10.251
	SRR3591707	mature leaf	7.549
	SRR3591708	Shoot apex	18.413
	SRR3591709	Stem	31.306
	SRR3591710	White floral bud	23.543
	SRR3591711	White flower	43.562
	SRR3591712	Green floral bud	22.697
	SRR3591713	Yellow flower	42.229
SRP173429	SRR8316895	Juvenile bud stage	15.955
	SRR8316896	Juvenile bud stage	31.921
	SRR8316897	Juvenile bud stage	12.448
	SRR8316894	Third green stage	11.570
	SRR8316900	Third green stage	23.141
	SRR8316901	Third green stage	23.350
	SRR8316898	Complete white stage	12.051
	SRR8316899	Complete white stage	27.302
	SRR8316903	Complete white stage	27.634
	SRR8316902	Silver flowering stage	19.432
	SRR8316904	Silver flowering stage	29.200
	SRR8316905	Silver flowering stage	12.070
	SRR8316906	Gold flowering stage	43.719
	SRR8316907	Gold flowering stage	55.806
	SRR8316908	Gold flowering stage	43.408
SRP132670	SRR6706286	Control	14.554
	SRR6706287	Light intensity 50%	16.351
	SRR6706288	Light intensity 20%	14.204
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.003
	CNS0095593	Slightly white alabastrum(diploid) 2	17.483
	CNS0095594	Slightly white alabastrum(diploid) 3	17.791
	CNS0095595	Whole white alabastrum(diploid) 2	17.386
	CNS0095596	Whole white alabastrum(diploid) 3	15.145
	CNS0095597	Whole white alabastrum(diploid) 4	16.278
	CNS0095598	Silvery flower (diploied) 1	22.080
	CNS0095599	Silvery flower (diploied) 2	28.264
	CNS0095600	Silvery flower (diploied) 3	43.721
	CNS0095601	Golden flower (diploid) 1	29.313
	CNS0095602	Golden flower (diploid) 2	41.699
	CNS0095603	Golden flower (diploid) 3	37.284
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.475
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.669
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.567
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.336
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.755
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.072
	CNS0095610	Silvery flower (tetraploid) 1	35.280
	CNS0095611	Silvery flower (tetraploid) 2	40.998
	CNS0095612	Silvery flower (tetraploid) 3	36.921
	CNS0095613	Golden flower (tetraploid) 1	31.119
	CNS0095614	Golden flower (tetraploid) 2	30.605
	CNS0095615	Golden flower (tetraploid) 3	50.308
CRA001975	CRR073297	Stem 1	16.263
	CRR073298	Stem 2	16.255
	CRR073299	Stem 3	14.147
	CRR073300	Leaf 1	13.182
	CRR073301	Leaf 2	10.963
	CRR073302	Leaf 3	8.805
	CRR073303	Juvenile bud 1	11.708
	CRR073304	Juvenile bud 2	8.772
	CRR073305	Juvenile bud 3	8.366
	CRR073306	Third green 1	8.473
	CRR073307	Third green 2	7.814
	CRR073308	Third green 3	9.559
	CRR073309	Second white 1	9.408
	CRR073310	Second white 2	16.681
	CRR073311	Second white 3	14.627
	CRR073312	Silver flowering 1	12.207
	CRR073313	Silver flowering 2	12.040
	CRR073314	Silver flowering 3	12.572
	CRR073315	Gold flowering 1	4.736
	CRR073316	Gold flowering 2	8.260
	CRR073317	Gold flowering 3	4.570
	CRR073318	Tawny withering 1	14.044
	CRR073319	Tawny withering 2	11.967
	CRR073320	Tawny withering 3	15.064