Gene detail

Detail information of GWHGAAZE001942

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009601545.1	2.52243E-96	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	4E-32	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	2E-95	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT3G06240.1	6E-29	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	65237286	65238479	-
GWHAAZE00000001	mRNA	65237286	65238479	-
GWHAAZE00000001	exon	65237286	65238479	-
GWHAAZE00000001	CDS	65237286	65238479	-

Transcript Sequence
>GWHTAAZE001946 ATGTCTGATTATCTTCCTGAAGAAGTACTAATCGACATTTTCTCCAGATTACCTGTTAAAACCCTAATACAAGTCCGATGCGTATGTAAACAATGGTTTTCCCTAATTTCCAATCCCAATTTCGCCACCGCACACATTGATAAGACCAAGAACAGTGATAAGCTCATTCTCAGGCATTTCACTGAGAAAGAGAGGGATGGAAAAGAACACTATTTACTACTTGAAAATGATCAAACACTTCGTGTGAATGACGATGTTAAACTAGAGTTCCCATTCAAGACTCGGTCGAGACATAATTTTAGGGTTGTGGGTTCTTGTAATGGATTATTGTGTTTGTCCGATGATCTCGGGGTTTATGCTTTTGGTATAATTCTGTGGAACCCTTCGATTAGAAGATTTGTGACACTTCCTACACCTAGGGTTACTAAGAGAACTCATGGGTCTTATTCACTTGTTCTTGGTTTCGGATTTGATTGTAAGAGTAATGATTATAAAGTGGTTAGGATTGCATACGTAAAAGGGAGAAATGGGTGTGAATTGATTCCGCCAGAGGTTGAGGTTTATAGCCTTAGCTCTGGGTCTTGGAGGAGCTTTGTAGCTGGTGCCCCTCCGTATGGTATATATTATGGGTATACGGGGTCGAATGCCTTTCTGAATGGGACATTGCATTGGATTGGATATGATCCTTGCAAGAAAGGTTCTAATGGGTGTCTAATTGTTTCGTTTGATATGGGCAATGAAGTGTTTTGTGAGGTTATGCTGCCAGATTCTTTAGCTCACTGTGCATGGGACTTGTCAATATCGCACTATGGGGAATTGCTTTCGGTGCTACAATATGAACAACGGGCAAAAGAACATTATTTCTCCTTGTGGGTGATGAAGGAATATGGTGTTGTAGATTCTTGGACGAAATTATATACGATTGATACATGGGGAGGGTTACATAAGACAATAGGATTTACTAAGCATGGGGAGGTCCTAATGGTCACGGCTCGTGGTAAGATGCTTTTGTATGACCGCAACACTAGACAGAAGAGTAATTTTGGAATTCGTGGGGCCATAGACTCATTTTTTGTGGACAATTACATGGATAGCTTGGTTTTGCTCAAGGGTGGAAGTGCAATCCTTGGTGGAGATGCTATTGTTTGCGAAGGAGGAGAGGAGGATGGAGAGGCTCTTCAGTGGCCAAGGTAA

Network for GWHGAAZE001942

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	4	39	1.50E-10
PF07734.14	FBA_1	217	338	1.20E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.236
	SRR3591706	second leaf	7.551
	SRR3591707	mature leaf	7.301
	SRR3591708	Shoot apex	9.501
	SRR3591709	Stem	7.875
	SRR3591710	White floral bud	11.289
	SRR3591711	White flower	13.546
	SRR3591712	Green floral bud	12.334
	SRR3591713	Yellow flower	8.851
SRP173429	SRR8316895	Juvenile bud stage	6.132
	SRR8316896	Juvenile bud stage	8.205
	SRR8316897	Juvenile bud stage	3.011
	SRR8316894	Third green stage	5.406
	SRR8316900	Third green stage	13.274
	SRR8316901	Third green stage	12.931
	SRR8316898	Complete white stage	7.251
	SRR8316899	Complete white stage	20.940
	SRR8316903	Complete white stage	10.147
	SRR8316902	Silver flowering stage	6.235
	SRR8316904	Silver flowering stage	9.767
	SRR8316905	Silver flowering stage	3.473
	SRR8316906	Gold flowering stage	12.361
	SRR8316907	Gold flowering stage	14.632
	SRR8316908	Gold flowering stage	14.288
SRP132670	SRR6706286	Control	9.338
	SRR6706287	Light intensity 50%	9.874
	SRR6706288	Light intensity 20%	10.085
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.991
	CNS0095593	Slightly white alabastrum(diploid) 2	8.429
	CNS0095594	Slightly white alabastrum(diploid) 3	7.469
	CNS0095595	Whole white alabastrum(diploid) 2	8.121
	CNS0095596	Whole white alabastrum(diploid) 3	6.735
	CNS0095597	Whole white alabastrum(diploid) 4	6.653
	CNS0095598	Silvery flower (diploied) 1	7.100
	CNS0095599	Silvery flower (diploied) 2	6.628
	CNS0095600	Silvery flower (diploied) 3	12.747
	CNS0095601	Golden flower (diploid) 1	7.914
	CNS0095602	Golden flower (diploid) 2	10.536
	CNS0095603	Golden flower (diploid) 3	12.642
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.963
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.922
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.990
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.878
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.513
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.121
	CNS0095610	Silvery flower (tetraploid) 1	14.943
	CNS0095611	Silvery flower (tetraploid) 2	17.489
	CNS0095612	Silvery flower (tetraploid) 3	17.109
	CNS0095613	Golden flower (tetraploid) 1	8.083
	CNS0095614	Golden flower (tetraploid) 2	15.252
	CNS0095615	Golden flower (tetraploid) 3	13.060
CRA001975	CRR073297	Stem 1	7.158
	CRR073298	Stem 2	6.521
	CRR073299	Stem 3	6.970
	CRR073300	Leaf 1	6.710
	CRR073301	Leaf 2	6.108
	CRR073302	Leaf 3	6.714
	CRR073303	Juvenile bud 1	6.430
	CRR073304	Juvenile bud 2	6.257
	CRR073305	Juvenile bud 3	6.314
	CRR073306	Third green 1	3.490
	CRR073307	Third green 2	2.646
	CRR073308	Third green 3	3.491
	CRR073309	Second white 1	4.071
	CRR073310	Second white 2	4.216
	CRR073311	Second white 3	4.440
	CRR073312	Silver flowering 1	3.618
	CRR073313	Silver flowering 2	4.624
	CRR073314	Silver flowering 3	3.566
	CRR073315	Gold flowering 1	2.184
	CRR073316	Gold flowering 2	5.355
	CRR073317	Gold flowering 3	5.956
	CRR073318	Tawny withering 1	6.090
	CRR073319	Tawny withering 2	3.931
	CRR073320	Tawny withering 3	5.740