Gene detail

Detail information of GWHGAAZE001943

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011098049.1	9.71096E-42	PREDICTED: F-box protein At3g07870-like [Sesamum indicum]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	3E-13	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	2E-35	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT3G06240.1	5E-12	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	65265376	65265975	-
GWHAAZE00000001	mRNA	65265376	65265975	-
GWHAAZE00000001	exon	65265376	65265975	-
GWHAAZE00000001	CDS	65265376	65265975	-

Transcript Sequence
>GWHTAAZE001947 ATGAAAGGTAAGGTTCATTGGGTTGGGTATAGACGAATTCTCCCATCAAGTGTTTGTTGTTTTATCCTCTTGTTTGATATGGAACGCGAGGTGTTTAGTGAGATGGAGTTGCCAGAGAGTTTGGTTCATGAGTATCCTTTAGGCATATCGGTTGCTCTATTGGGTGAATCACTTTCGGTTCTGCAGTACGATAAGTGTGTTCATAGCAAGGGTTGTACTATCTGGATAATGAAAGAATATGGCTCGGTGGGGTCTTGGAGTAAGTTATATAGTATTAATCTTCAGCGGAGATTAGTGAGGACACTTGGGTTGAGGAAGAATGGTGATTTGCTGCTTGCAGTGGGTAAAGATTTGGTTTCATATAATCCCGAGAGCGAGAAAATCAAGAATCTTGGAGTACGTAGCACTAAAGATGTGTTTCATGTGGCTAGTTATGTGGAGAGCCTAGTTTTACTCAAGGAAGGACATGAAGTCCCAGATGAGGCCCAAAATTCAGTAGATGAAGAGGAGGATTCTCACTGTGCCGGAATGGAACATATGGAGTACGCAATCCAGTTCTTTACTGATCGATCTTTTAAAGCTTCTCTTATTGGTTCGTGA

Network for GWHGAAZE001943

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07734.14	FBA_1	1	97	1.10E-09
PF14369.7	zinc_ribbon_9	7	38	1.50E-13
PF13639.7	zf-RING_2	188	230	7.90E-10
PF06547.13	DUF1117	260	361	4.10E-40

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0061630	molecular_function	ubiquitin protein ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.960
	SRR3591706	second leaf	3.040
	SRR3591707	mature leaf	2.622
	SRR3591708	Shoot apex	6.924
	SRR3591709	Stem	1.894
	SRR3591710	White floral bud	2.692
	SRR3591711	White flower	1.745
	SRR3591712	Green floral bud	4.467
	SRR3591713	Yellow flower	0.447
SRP173429	SRR8316895	Juvenile bud stage	5.078
	SRR8316896	Juvenile bud stage	3.111
	SRR8316897	Juvenile bud stage	1.431
	SRR8316894	Third green stage	1.265
	SRR8316900	Third green stage	4.546
	SRR8316901	Third green stage	4.305
	SRR8316898	Complete white stage	0.243
	SRR8316899	Complete white stage	7.588
	SRR8316903	Complete white stage	0.827
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.192
	SRR8316905	Silver flowering stage	0.172
	SRR8316906	Gold flowering stage	0.048
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.141
SRP132670	SRR6706286	Control	0.337
	SRR6706287	Light intensity 50%	0.148
	SRR6706288	Light intensity 20%	0.395
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.572
	CNS0095593	Slightly white alabastrum(diploid) 2	6.565
	CNS0095594	Slightly white alabastrum(diploid) 3	3.755
	CNS0095595	Whole white alabastrum(diploid) 2	4.451
	CNS0095596	Whole white alabastrum(diploid) 3	3.203
	CNS0095597	Whole white alabastrum(diploid) 4	4.532
	CNS0095598	Silvery flower (diploied) 1	7.404
	CNS0095599	Silvery flower (diploied) 2	7.617
	CNS0095600	Silvery flower (diploied) 3	1.506
	CNS0095601	Golden flower (diploid) 1	6.934
	CNS0095602	Golden flower (diploid) 2	2.813
	CNS0095603	Golden flower (diploid) 3	4.873
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.852
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.806
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.362
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.673
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.551
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.061
	CNS0095610	Silvery flower (tetraploid) 1	0.725
	CNS0095611	Silvery flower (tetraploid) 2	2.345
	CNS0095612	Silvery flower (tetraploid) 3	0.969
	CNS0095613	Golden flower (tetraploid) 1	0.166
	CNS0095614	Golden flower (tetraploid) 2	0.535
	CNS0095615	Golden flower (tetraploid) 3	0.109
CRA001975	CRR073297	Stem 1	3.467
	CRR073298	Stem 2	4.005
	CRR073299	Stem 3	3.795
	CRR073300	Leaf 1	2.410
	CRR073301	Leaf 2	1.518
	CRR073302	Leaf 3	0.960
	CRR073303	Juvenile bud 1	1.687
	CRR073304	Juvenile bud 2	1.009
	CRR073305	Juvenile bud 3	0.598
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.019
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.010
	CRR073316	Gold flowering 2	2.001
	CRR073317	Gold flowering 3	1.899
	CRR073318	Tawny withering 1	2.148
	CRR073319	Tawny withering 2	0.500
	CRR073320	Tawny withering 3	2.006