Gene detail

Detail information of GWHGAAZE001944

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082973.1	5.6375E-115	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Sesamum indicum]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	6E-35	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	7E-111	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT3G06240.1	6E-32	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	65310700	65312022	-
GWHAAZE00000001	mRNA	65310700	65312022	-
GWHAAZE00000001	exon	65310700	65312022	-
GWHAAZE00000001	CDS	65310700	65312022	-

Transcript Sequence
>GWHTAAZE001948 ATGTCGGATTATCTTCCACAAGAGGTGCTGCTCGAAATCCTCTCAAGATTACCCGTTCAATCTCTGCTGAAATTCAGGTGCGTATCAAAGTCATGGAACTCTCTCATTACTAGCCCTAATTTCATCACTATCCACATAAATCAATCACTTGCTTCCAATCAAACAAACAACACTCACACACTCTTCAGGCATTACACTCTCACTCACAAAAAAGAGCTGTTTTCTTACCGATCCGATACCGACTACACATTTGATGAATATCAAGGCCTCAAATGCCCTCTCAAGAGCAAATATGGGTACTATACTAGAATCATTGGCACTTGCAATGGTTTGCTTTGTCTCAGCGATGACATTTTTAGATACACAAACACTGTTTTTCTCTGGAACCCATCAATTAGGAGGTATTTGACACTTCCCGTGCCTCGTGTTACAACCGATTTGTACAAGCATTTGATGAGTGTTTATGGGTTTGGTTTTGATCCCAATACTAATGATTACAAAGTTGTGCGGATTTCATATGAGCAAGGGGATAATGGGTATGTTTTCCCTCCAAAAGTTGAGCTTTATAAGCTTAGTACACTCTCTTGGGTTGATCTCTGTTGGGATCAGGTTAGGGGTGGTTTGCCTACTTTTGGTGTAGGTGAGCATTTTTGGACTCAGGTTTATATGAAAGGTAAGGTTCATTGGGTTGGGTATAGACGAATTCGCCCATCAAGTGTTTGTTGTTTTATCCTCTTGTTTGATATGGAACGCGAGGTGTTTAGTGAGATGGAGTTGCCAGAGAGTTTGGTCCGTGGGTATCCTTTAAGCATATCGGTTGCTCTATTGGGTGAATCACTTTCGGTTCTGCAGTACGATAAGTGTGTTCATAGCAAGGGTTGTACTATCTGGATAATGAAAGAATATGGCTCGGTGGGGTCTTGGAGTAAGTTATATAGTATTAATCTTCAGCGGAGATTAGTGAGGACACTTGGGTTGAGGAAGAATGGTGATTTGCTGCTTGCAGTGGGTAAAGATTTGGTTTCATATAATCCCGAGAGCGAGAAATTCAAGAATCTTGGAGTACGTAGCACTAGAGATGCGTTTCATGTGGCTAGTTATGTGGAGAGCCTAGTTTTACTCAAGGGAGGACATGAAGTCCCAGTTGAGGCCCAAAATTCAGCAGATGAAGAGGAGGATTCTCACCGTGCCGTAATGGAACACATGGAGTATGCAATCCAGTTCTTTACTGATCAATCTTTTAATGCTTCTCTTATCGATCTTTTATTGACCTCCTTAGTGGTTGTGATTTACCTTTGTTTAATGTTACTAATACTCTTTTGA

Network for GWHGAAZE001944

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	5	42	2.40E-11
PF07734.14	FBA_1	221	319	9.90E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.961
	SRR3591706	second leaf	3.954
	SRR3591707	mature leaf	2.258
	SRR3591708	Shoot apex	6.835
	SRR3591709	Stem	3.686
	SRR3591710	White floral bud	1.924
	SRR3591711	White flower	1.664
	SRR3591712	Green floral bud	4.005
	SRR3591713	Yellow flower	0.248
SRP173429	SRR8316895	Juvenile bud stage	3.601
	SRR8316896	Juvenile bud stage	3.452
	SRR8316897	Juvenile bud stage	1.228
	SRR8316894	Third green stage	0.852
	SRR8316900	Third green stage	4.644
	SRR8316901	Third green stage	3.242
	SRR8316898	Complete white stage	0.432
	SRR8316899	Complete white stage	5.638
	SRR8316903	Complete white stage	0.796
	SRR8316902	Silver flowering stage	0.229
	SRR8316904	Silver flowering stage	0.408
	SRR8316905	Silver flowering stage	0.103
	SRR8316906	Gold flowering stage	0.470
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.064
SRP132670	SRR6706286	Control	0.514
	SRR6706287	Light intensity 50%	0.637
	SRR6706288	Light intensity 20%	0.776
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.469
	CNS0095593	Slightly white alabastrum(diploid) 2	4.379
	CNS0095594	Slightly white alabastrum(diploid) 3	2.491
	CNS0095595	Whole white alabastrum(diploid) 2	3.108
	CNS0095596	Whole white alabastrum(diploid) 3	2.114
	CNS0095597	Whole white alabastrum(diploid) 4	2.009
	CNS0095598	Silvery flower (diploied) 1	4.081
	CNS0095599	Silvery flower (diploied) 2	3.388
	CNS0095600	Silvery flower (diploied) 3	1.412
	CNS0095601	Golden flower (diploid) 1	2.810
	CNS0095602	Golden flower (diploid) 2	2.403
	CNS0095603	Golden flower (diploid) 3	2.325
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.562
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.695
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.389
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.763
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.794
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.272
	CNS0095610	Silvery flower (tetraploid) 1	1.023
	CNS0095611	Silvery flower (tetraploid) 2	1.848
	CNS0095612	Silvery flower (tetraploid) 3	0.864
	CNS0095613	Golden flower (tetraploid) 1	0.202
	CNS0095614	Golden flower (tetraploid) 2	0.857
	CNS0095615	Golden flower (tetraploid) 3	0.136
CRA001975	CRR073297	Stem 1	3.531
	CRR073298	Stem 2	3.774
	CRR073299	Stem 3	3.363
	CRR073300	Leaf 1	1.768
	CRR073301	Leaf 2	1.416
	CRR073302	Leaf 3	1.878
	CRR073303	Juvenile bud 1	1.760
	CRR073304	Juvenile bud 2	0.838
	CRR073305	Juvenile bud 3	2.267
	CRR073306	Third green 1	0.143
	CRR073307	Third green 2	0.030
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.056
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.009
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.196
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.058
	CRR073316	Gold flowering 2	0.839
	CRR073317	Gold flowering 3	1.317
	CRR073318	Tawny withering 1	2.048
	CRR073319	Tawny withering 2	1.338
	CRR073320	Tawny withering 3	1.509