Gene detail

Detail information of GWHGAAZE001946

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002453272.1	6.96967E-23	hypothetical protein SORBIDRAFT_04g002940 [Sorghum bicolor]
Swissprot	tr\|Q84TH9\|NLP7_ARATH	2E-10	Protein NLP7
trEMBL	tr\|W5GTI0\|W5GTI0_WHEAT	1E-24	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_6BS_F2B8B4E55.1} (Fragment)
TAIR10	AT4G24020.1	6E-10	NIN like protein 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	65379249	65381526	+
GWHAAZE00000001	mRNA	65379249	65381526	+
GWHAAZE00000001	exon	65379249	65379359	+
GWHAAZE00000001	exon	65379537	65379567	+
GWHAAZE00000001	exon	65379652	65379978	+
GWHAAZE00000001	exon	65381033	65381526	+
GWHAAZE00000001	CDS	65379249	65379359	+
GWHAAZE00000001	CDS	65379537	65379567	+
GWHAAZE00000001	CDS	65379652	65379978	+
GWHAAZE00000001	CDS	65381033	65381526	+

Transcript Sequence
>GWHTAAZE001950 AATGTATCAGAGATCTCTCCTTTCCTCTTCCTCTCAGTTCCGGCCCCTACAAGTCAGTTCTTCTACTTCGATGATTTTTCTTGCGAATCCAACCAATTGACCGCTACTAAGGACACAGTACCATCAGCAACAGCGCAAGTAGCTGGTGCTGGTACTGATAGAACTCCATGTTGTACTAGTCCTAATGTAGCATTAGTGTTAGAGAAGATGGGGCTTGACCGGCCTGAACAACAACCAGGATTATCAATGGAATGTGATCCTGCTCTAACTCTAAATAATGGAGTAGGAGGAGGAGATAATAATAATTTATCTGCTTCTGTTTCTGTTGCTTCTGCTAATGCGGACAAGCCCAACAAAACGAAAAAGGTAGGACCAGTAACTGGTGATACCTGTGGTATCTCAATTAGTTTAGAACAACTCGAACAACTTTTTGAGAAGCCTCGTCAAGAAGCTGCCGATATCCTTGGAGTTAGTGTTTCTACGTTGAAGCGGATCTCACGGGATCACAAGATCAAACGTTGGCCATTTCAGAAGAAAAATAACCGGGTTGTAAAGAAGGTATCTAGTTCTCCAAGAAACTGTACCTGTTCAAGTGGACTGGATCCTAAGAAATTAGTAGCTGTGGCAGCAACTAATGTTATTCAGACCTTACCACCACCTGCTGCAGAACTAGCAATGAAAGATGCGAGGCTTATTATCTTTAAGGCCAACTGTGAGAATTTTATCATAAGGTTTGAACTCCCTTCTACGTTGAAAAAGGAAGATGTGGAGCAACAAGTGGCAAAAAGACTGGGTTTAAAGATGGGAAGCTTTAATATTAGTTATCTGGACGAATATAAAGATTGGGTTTTAATAACCTGTGACGATGACTTGCGTAGATTACTGCACTGGACAACAATCCGAATACAGGTTACGCCATCTAGCAAGTTGATCACCTTGACTTCTGAATTTAATTTAATTTAA

Network for GWHGAAZE001946

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02042.16	RWP-RK	134	179	3.00E-15
PF00564.25	PB1	239	304	2.50E-09
PF03140.16	DUF247	66	435	3.20E-120

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.034
	SRR3591712	Green floral bud	0.133
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.014
	SRR8316896	Juvenile bud stage	1.237
	SRR8316897	Juvenile bud stage	0.386
	SRR8316894	Third green stage	0.074
	SRR8316900	Third green stage	0.079
	SRR8316901	Third green stage	0.088
	SRR8316898	Complete white stage	0.127
	SRR8316899	Complete white stage	1.307
	SRR8316903	Complete white stage	0.003
	SRR8316902	Silver flowering stage	0.072
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.032
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.126
	SRR6706287	Light intensity 50%	0.114
	SRR6706288	Light intensity 20%	0.118
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.471
	CNS0095593	Slightly white alabastrum(diploid) 2	1.796
	CNS0095594	Slightly white alabastrum(diploid) 3	1.955
	CNS0095595	Whole white alabastrum(diploid) 2	0.617
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.773
	CNS0095598	Silvery flower (diploied) 1	1.841
	CNS0095599	Silvery flower (diploied) 2	2.451
	CNS0095600	Silvery flower (diploied) 3	1.438
	CNS0095601	Golden flower (diploid) 1	3.182
	CNS0095602	Golden flower (diploid) 2	1.338
	CNS0095603	Golden flower (diploid) 3	1.418
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.441
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.117
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.435
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.426
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.186
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.092
	CNS0095610	Silvery flower (tetraploid) 1	0.110
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.132
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.008
	CRR073298	Stem 2	0.499
	CRR073299	Stem 3	0.464
	CRR073300	Leaf 1	0.387
	CRR073301	Leaf 2	0.387
	CRR073302	Leaf 3	0.025
	CRR073303	Juvenile bud 1	0.328
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.222
	CRR073306	Third green 1	0.123
	CRR073307	Third green 2	0.008
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.137
	CRR073316	Gold flowering 2	0.790
	CRR073317	Gold flowering 3	0.102
	CRR073318	Tawny withering 1	0.488
	CRR073319	Tawny withering 2	1.497
	CRR073320	Tawny withering 3	0.173