Gene detail

Detail information of GWHGAAZE001948

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082973.1	4.7982E-82	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Sesamum indicum]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	7E-23	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A022QS53\|A0A022QS53_ERYGU	3E-72	Uncharacterized protein {ECO:0000313\|EMBL:EYU30756.1}
TAIR10	AT3G06240.1	5E-20	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	65403190	65404402	-
GWHAAZE00000001	mRNA	65403190	65404402	-
GWHAAZE00000001	exon	65403190	65403870	-
GWHAAZE00000001	exon	65403980	65404402	-
GWHAAZE00000001	CDS	65403980	65404402	-
GWHAAZE00000001	CDS	65403190	65403870	-

Transcript Sequence
>GWHTAAZE001952 ATGTCGAATTATCTTCCCCATGAATTGCAGCTCGAAGTACTCTCAAGACTACCCGTTAAATCTCTGCTGAAATTCAGGTGCGTATCAAAGTACTGGAACTCTCTAATCACTAGCCCTAATTTCATCACTGCTCACATAAATCAATCACTTGCTTCCCATCAAACGAACAACACTCACACACTCGTCAGGGATTACTCTTTCACTCACAGAAAAGAGATATTTTCTTATCGATTTGACACCGACGACACCTCCGCCTTTGACGAATATGAAGTCCTCAAATGCCCACTGAGGAGAAACAATGGGTACTATTTCAGCATCATTGGCTCTTGCAATGGCTTGCTCTGTCTCACCGAAGATATTTCTGAATCTGCAAGCAATGTTTTCCTCTGGAACCCATCAATTGGGAGGTATTTGACACTTCCCGATATTGGTAATATTATTCGACCTCAAGTTGAGATTTATAAGCTTAGTATACTCTCTTGGGTTGATCTCTCTTGGGATCAAATTAGAGGTGGTTTGCCTCCTTTTCTTTTTATGGGTGAGTATTTCCGAACTCAGGTTTTTATGAATGGTCATGTTCATTGGATTGGATATAGACGAATTTGCCCATCAGGTGTTTGTTGTTTTCTCCTCTTGTTTGATATGAGACGCGAGGTGTTTAGTGAGATGGAGTTGCCAGAGAGTTTGGTTCATGAGACTCCTTTAAGCATATCAGTTGCTCTATTGGGCGAATCACTTTCAGTCATGGAGTGCAATATATGTGTTCAACTCAAGGGTTGTACTATCTGGATAATGAAAGAATATGGCTCGGTGTGGTCTTGGAGTAAACTATATAGCATTATTGATCTTGGGCTGGGATTTCTGAGGATACTTGGGTTAAGGAAGAACGGTGATTTGCTGCTTGCATCAGATCATGATTTGGTTTCATATAATCCTGATGGCCAGAACATTAAGAATCTTGGAGTAAGTAGCACTATAGATTCATTTCATGCGACTAGTTATGTGGAGAGCCTAGTTTTACTCAAGGAAGGATATGAAGTCCCGAAGGAGGTTCAATATTCAGTAGAAGAAGCAAGACGATTATATAATCAGTTAAGTTCATAA

Network for GWHGAAZE001948

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	5	41	1.90E-09
PF07734.14	FBA_1	186	279	1.30E-08
PF00076.23	RRM_1	13	55	4.60E-07
PF00076.23	RRM_1	90	132	0.00013

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.631
	SRR3591706	second leaf	1.085
	SRR3591707	mature leaf	1.146
	SRR3591708	Shoot apex	2.233
	SRR3591709	Stem	1.310
	SRR3591710	White floral bud	1.748
	SRR3591711	White flower	1.686
	SRR3591712	Green floral bud	1.694
	SRR3591713	Yellow flower	0.498
SRP173429	SRR8316895	Juvenile bud stage	1.645
	SRR8316896	Juvenile bud stage	2.569
	SRR8316897	Juvenile bud stage	0.590
	SRR8316894	Third green stage	0.800
	SRR8316900	Third green stage	1.778
	SRR8316901	Third green stage	1.258
	SRR8316898	Complete white stage	0.563
	SRR8316899	Complete white stage	1.850
	SRR8316903	Complete white stage	0.740
	SRR8316902	Silver flowering stage	0.362
	SRR8316904	Silver flowering stage	1.403
	SRR8316905	Silver flowering stage	0.468
	SRR8316906	Gold flowering stage	0.989
	SRR8316907	Gold flowering stage	1.087
	SRR8316908	Gold flowering stage	0.312
SRP132670	SRR6706286	Control	0.803
	SRR6706287	Light intensity 50%	0.790
	SRR6706288	Light intensity 20%	0.997
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.027
	CNS0095593	Slightly white alabastrum(diploid) 2	1.155
	CNS0095594	Slightly white alabastrum(diploid) 3	1.188
	CNS0095595	Whole white alabastrum(diploid) 2	0.842
	CNS0095596	Whole white alabastrum(diploid) 3	1.580
	CNS0095597	Whole white alabastrum(diploid) 4	1.051
	CNS0095598	Silvery flower (diploied) 1	1.807
	CNS0095599	Silvery flower (diploied) 2	0.944
	CNS0095600	Silvery flower (diploied) 3	1.843
	CNS0095601	Golden flower (diploid) 1	1.146
	CNS0095602	Golden flower (diploid) 2	1.815
	CNS0095603	Golden flower (diploid) 3	1.874
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.236
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.052
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.836
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.286
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.615
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.909
	CNS0095610	Silvery flower (tetraploid) 1	1.050
	CNS0095611	Silvery flower (tetraploid) 2	1.790
	CNS0095612	Silvery flower (tetraploid) 3	0.823
	CNS0095613	Golden flower (tetraploid) 1	0.259
	CNS0095614	Golden flower (tetraploid) 2	1.266
	CNS0095615	Golden flower (tetraploid) 3	0.436
CRA001975	CRR073297	Stem 1	1.211
	CRR073298	Stem 2	1.253
	CRR073299	Stem 3	0.552
	CRR073300	Leaf 1	1.115
	CRR073301	Leaf 2	0.808
	CRR073302	Leaf 3	0.502
	CRR073303	Juvenile bud 1	0.388
	CRR073304	Juvenile bud 2	0.551
	CRR073305	Juvenile bud 3	0.852
	CRR073306	Third green 1	0.029
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.071
	CRR073309	Second white 1	0.055
	CRR073310	Second white 2	0.189
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.139
	CRR073313	Silver flowering 2	0.321
	CRR073314	Silver flowering 3	0.075
	CRR073315	Gold flowering 1	0.704
	CRR073316	Gold flowering 2	0.948
	CRR073317	Gold flowering 3	0.470
	CRR073318	Tawny withering 1	0.528
	CRR073319	Tawny withering 2	0.259
	CRR073320	Tawny withering 3	0.453