Gene detail

Detail information of GWHGAAZE001951

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011098049.1	8.31589E-92	PREDICTED: F-box protein At3g07870-like [Sesamum indicum]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	9E-26	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	5E-92	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT3G06240.1	8E-23	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	65442875	65444206	+
GWHAAZE00000001	mRNA	65442875	65444206	+
GWHAAZE00000001	exon	65442875	65444206	+
GWHAAZE00000001	CDS	65442875	65444206	+

Transcript Sequence
>GWHTAAZE001955 ATGTCGGACTATCTTCCTCAGGAATTGCAGGTGGAAATCCTCTCAAGACTACCGGTTCAATCTCTGCTTCGATTCAGGTGCGCATCAAAGTCATGGAACTCTCTAATCACTAGCCCTAATTTCATCACTACTCACTTAAACCGAACACTTGCTTCCAATTCCAATCAAACACATGCTCGCACACTCCTCAGGCATTACTCTCTCACTCAAGAGAAAGAGATTTTTTCTTATGGATTTGACACCAACAACACCGACGCATTTGATGTATATCAACACCTCAATTGCCCACTCAGGAGAAACTATGGGTACTATTTTATCATTGGCTCTTGCAATGGCTTGCTCTGTCTCACCGATGACAATTTTGAAAATACGAACAATGTTTTCCTTTGGAACCCATCAATTAGTAGGTATTTGAAACTTCCTGTGCCTCGTGTTACTAAGGATACGTATTTGTATAAGTATTTGATGTGTGTTTATGGTTTTGGTGTTGATCCCAATACTAATGATTACAAGGTTGTGAGGATTTCGTACACGAAAATGCATAAAGAGTGTTATTTCGCTCCTGAAGTTGAGCTTTACAAACTTAGCACGCACTCTTGGATTGACCTCCCTTGGGAAGAAGTTAGGGGTGTTTTACCCCCTTTTGGTATAGGTGAGCATTTGTGGTCACGAGCTTTTATGAATGGTAAAGCTCATTGGATTGGGTATAAACAAAATCGCTCATCAAGTTGCAGCTACCGCATGAGCATTTGTTGTTTTGTTCTCTTGTTTGATATGGGAAACAACGTGTTTAGCGATTTGCAGTTGCCAGAGACTTTGGTTGAAGTGTTTCCGTTAAAATTAGTGGTTGCTCTAGTGGGCAAATCACTTTCGGTGTTGCAGTATGATGAATACTTGGGTAGTAAGGTTTGTACTGTATGGATAATGAAAGACTATGGTGTTGTTGAGTCTTGGGATAAACTATGCACCATTGATCTTGGGGGGCGATTAACGAGGACAATTGGGTTGAGGAGGAACGGTGATTTTCTTCTTGCAGTGGATGAAGATTTGGTTTCTTATAATCCTAATACCCATCAAATCAAAAACCTTGGACTGCGAAGCATTAGTCATGCATTTTACGTGGCTAGTTATGTGGACAGTCTAGTTTTACTTGAGGAAGGACATAAAGTCCCGATGGACAATGAAAATGCAGCAGATGAACTGCAGGATGAGGATTTTTATATTGATGGTTTCGCACTACAACACAGGGAGAACAAAATCCAGGGCTGTATCCTCCGAGTTTTAAATTTATTGTTAGGTTACATTGACAAATTATCCCGCTTACCACTGTAG

Network for GWHGAAZE001951

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	5	43	1.00E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K12589	RRP42, EXOSC7	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.257
	SRR3591706	second leaf	1.679
	SRR3591707	mature leaf	1.276
	SRR3591708	Shoot apex	2.786
	SRR3591709	Stem	1.051
	SRR3591710	White floral bud	2.031
	SRR3591711	White flower	1.789
	SRR3591712	Green floral bud	2.273
	SRR3591713	Yellow flower	0.552
SRP173429	SRR8316895	Juvenile bud stage	2.342
	SRR8316896	Juvenile bud stage	2.811
	SRR8316897	Juvenile bud stage	1.291
	SRR8316894	Third green stage	1.123
	SRR8316900	Third green stage	4.066
	SRR8316901	Third green stage	3.572
	SRR8316898	Complete white stage	1.134
	SRR8316899	Complete white stage	7.707
	SRR8316903	Complete white stage	1.663
	SRR8316902	Silver flowering stage	0.780
	SRR8316904	Silver flowering stage	1.005
	SRR8316905	Silver flowering stage	0.891
	SRR8316906	Gold flowering stage	1.200
	SRR8316907	Gold flowering stage	1.573
	SRR8316908	Gold flowering stage	1.432
SRP132670	SRR6706286	Control	0.960
	SRR6706287	Light intensity 50%	1.545
	SRR6706288	Light intensity 20%	1.583
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.579
	CNS0095593	Slightly white alabastrum(diploid) 2	2.912
	CNS0095594	Slightly white alabastrum(diploid) 3	3.192
	CNS0095595	Whole white alabastrum(diploid) 2	2.059
	CNS0095596	Whole white alabastrum(diploid) 3	3.016
	CNS0095597	Whole white alabastrum(diploid) 4	2.476
	CNS0095598	Silvery flower (diploied) 1	5.387
	CNS0095599	Silvery flower (diploied) 2	3.325
	CNS0095600	Silvery flower (diploied) 3	3.594
	CNS0095601	Golden flower (diploid) 1	4.732
	CNS0095602	Golden flower (diploid) 2	4.756
	CNS0095603	Golden flower (diploid) 3	3.969
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.454
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.559
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.870
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.723
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.247
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.711
	CNS0095610	Silvery flower (tetraploid) 1	1.300
	CNS0095611	Silvery flower (tetraploid) 2	2.829
	CNS0095612	Silvery flower (tetraploid) 3	1.791
	CNS0095613	Golden flower (tetraploid) 1	0.740
	CNS0095614	Golden flower (tetraploid) 2	0.809
	CNS0095615	Golden flower (tetraploid) 3	0.600
CRA001975	CRR073297	Stem 1	2.621
	CRR073298	Stem 2	2.117
	CRR073299	Stem 3	2.617
	CRR073300	Leaf 1	1.317
	CRR073301	Leaf 2	1.553
	CRR073302	Leaf 3	1.939
	CRR073303	Juvenile bud 1	0.902
	CRR073304	Juvenile bud 2	1.135
	CRR073305	Juvenile bud 3	1.293
	CRR073306	Third green 1	0.096
	CRR073307	Third green 2	0.071
	CRR073308	Third green 3	0.440
	CRR073309	Second white 1	0.099
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.190
	CRR073312	Silver flowering 1	0.107
	CRR073313	Silver flowering 2	0.059
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.233
	CRR073316	Gold flowering 2	1.996
	CRR073317	Gold flowering 3	1.128
	CRR073318	Tawny withering 1	0.886
	CRR073319	Tawny withering 2	1.544
	CRR073320	Tawny withering 3	0.901