Gene detail

Detail information of GWHGAAZE001974

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082970.1	1.08508E-81	PREDICTED: F-box protein At3g07870-like [Sesamum indicum]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	2E-30	F-box protein CPR30
trEMBL	tr\|M1BWG5\|M1BWG5_SOLTU	4E-75	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400054509}
TAIR10	AT3G06240.1	9E-23	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	66265407	66266615	+
GWHAAZE00000001	mRNA	66265407	66266615	+
GWHAAZE00000001	exon	66265407	66266615	+
GWHAAZE00000001	CDS	66265407	66266615	+

Transcript Sequence
>GWHTAAZE001978 ATGTCAGATTATCTTCCTCCAGAAGTGCTTAAAGAAATCATTACGAGGCTACCGGTGAAGTCTCTGCTGAGATGCACAAGTGTGTGCAAATCATGGTACTCTCTCATTACTTCCCCCAAATTCATCACCACTCACCTCAATCATCGCAATAACAATAGAAATAATCATATACTTATTAGGAATTTCGTCGACTCGTTTGAGTACTCTGTACACAGAGATAATGAAACATTTGATAAGGTTTCAACCCTAGAATTTCCGTTACCTGGGTTTTTTAGGATCATAGGTAGTTCTAATGGATTGATGTGCTTGTCTAATGATGAGGTTGTTGCTGTTGATCATATGAGAACTACGATTCTGTGGAACCCATCCATTCGAAAATACGCGACTCTTCCGAGGCCAAGTGTTACCTTTGACTCACATGGTCATTATCAGCATACTTTAGGATTTGGATTCCACTCTGCAACGAATGACTACAAGGTTGTCAGGGTTGTTCATCTCATGACTCGTATTGAAACACTGCCGGGGCCAAAGGTAGAGCTTTATGAGCTTAGCACCGGCTGCTGGCGGAGGATTAATGTTGGGGACTTTAAGTATATTGTCAATGAGGGTGACCCTCAAGCGTTCTTGAATGGTGTGATCCATTGGACAGGCTATGAAAGAGATGGTATTCGTAATTTGATTGTGTCATTCAACATAGAAAATGAGGTGCTTGGTGCTATGATGGTGCCACATAGTTTACAGCAGGGGTTTCCCCTGCGTGTAGCAGTATATGGAGATTCGCTTTCTTTGATGGAACATAAACTTTCTAGCAACGATTGTCATTGTTGCGTATGGGTGATGCAGGAGTATGGCATAGCCAAATCTTGGAGAAAACAATTCACAATTGATCTAAATAGGCGGTTTTTGAGGGGGCCATTCAGCTTTGGAGAGAGAGGTGATGCTTTACTTGCAAAACCACATGAAAATGGCCTTGGAGGAGATATGGTTTCTTATGATCCCAAAAGCAAACAAATGAAGAATCTTGGGATAAGCGGACGCATGCATGCTTTTGACAAAGATACTTATGTGGAGAGCCTAGTCCTACTTAGGGGTTTAAGTGACGTCTTGGGGAGGCGGAAAGGTTCTTGTGATGCAGTTGCTTTAGAGGGGGTGTCCTTTTTGCGAAAAGAAGATGATGAAGGTCAAGGAAACAAAAGAATTGAAATATAA

Network for GWHGAAZE001974

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	5	43	3.40E-11
PF08268.13	FBA_3	208	296	0.00024
PF04398.13	DUF538	20	126	9.40E-29

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.167
	SRR3591706	second leaf	4.138
	SRR3591707	mature leaf	7.090
	SRR3591708	Shoot apex	8.749
	SRR3591709	Stem	10.223
	SRR3591710	White floral bud	7.851
	SRR3591711	White flower	12.480
	SRR3591712	Green floral bud	8.223
	SRR3591713	Yellow flower	9.013
SRP173429	SRR8316895	Juvenile bud stage	4.262
	SRR8316896	Juvenile bud stage	4.923
	SRR8316897	Juvenile bud stage	2.399
	SRR8316894	Third green stage	2.641
	SRR8316900	Third green stage	7.390
	SRR8316901	Third green stage	5.860
	SRR8316898	Complete white stage	4.364
	SRR8316899	Complete white stage	12.768
	SRR8316903	Complete white stage	8.681
	SRR8316902	Silver flowering stage	5.692
	SRR8316904	Silver flowering stage	8.203
	SRR8316905	Silver flowering stage	4.511
	SRR8316906	Gold flowering stage	18.980
	SRR8316907	Gold flowering stage	12.993
	SRR8316908	Gold flowering stage	13.248
SRP132670	SRR6706286	Control	9.687
	SRR6706287	Light intensity 50%	10.106
	SRR6706288	Light intensity 20%	10.222
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.684
	CNS0095593	Slightly white alabastrum(diploid) 2	6.402
	CNS0095594	Slightly white alabastrum(diploid) 3	5.620
	CNS0095595	Whole white alabastrum(diploid) 2	4.734
	CNS0095596	Whole white alabastrum(diploid) 3	3.414
	CNS0095597	Whole white alabastrum(diploid) 4	4.148
	CNS0095598	Silvery flower (diploied) 1	8.297
	CNS0095599	Silvery flower (diploied) 2	6.464
	CNS0095600	Silvery flower (diploied) 3	12.295
	CNS0095601	Golden flower (diploid) 1	9.169
	CNS0095602	Golden flower (diploid) 2	11.125
	CNS0095603	Golden flower (diploid) 3	11.630
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.342
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.175
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.337
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.288
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.981
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.711
	CNS0095610	Silvery flower (tetraploid) 1	11.911
	CNS0095611	Silvery flower (tetraploid) 2	12.594
	CNS0095612	Silvery flower (tetraploid) 3	8.515
	CNS0095613	Golden flower (tetraploid) 1	7.497
	CNS0095614	Golden flower (tetraploid) 2	10.688
	CNS0095615	Golden flower (tetraploid) 3	13.478
CRA001975	CRR073297	Stem 1	8.346
	CRR073298	Stem 2	6.227
	CRR073299	Stem 3	4.684
	CRR073300	Leaf 1	5.811
	CRR073301	Leaf 2	7.768
	CRR073302	Leaf 3	4.773
	CRR073303	Juvenile bud 1	6.188
	CRR073304	Juvenile bud 2	4.940
	CRR073305	Juvenile bud 3	7.367
	CRR073306	Third green 1	4.823
	CRR073307	Third green 2	5.136
	CRR073308	Third green 3	3.904
	CRR073309	Second white 1	5.615
	CRR073310	Second white 2	3.528
	CRR073311	Second white 3	4.079
	CRR073312	Silver flowering 1	4.126
	CRR073313	Silver flowering 2	4.573
	CRR073314	Silver flowering 3	3.755
	CRR073315	Gold flowering 1	5.349
	CRR073316	Gold flowering 2	4.014
	CRR073317	Gold flowering 3	4.720
	CRR073318	Tawny withering 1	4.500
	CRR073319	Tawny withering 2	4.190
	CRR073320	Tawny withering 3	4.072