Detail information of GWHGAAZE001975


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011082970.11.24848E-76PREDICTED: F-box protein At3g07870-like [Sesamum indicum]
Swissprottr|Q9SU30|CPR30_ARATH2E-28F-box protein CPR30
trEMBLtr|M1BWG5|M1BWG5_SOLTU4E-75Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400054509}
TAIR10AT4G12560.21E-19F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6627105066272051+
GWHAAZE00000001mRNA6627105066272051+
GWHAAZE00000001exon6627105066272051+
GWHAAZE00000001CDS6627105066272051+
Transcript Sequence

Network for GWHGAAZE001975

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box5436.30E-11
PF00931.23NB-ARC1663771.20E-23
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding
GO:0043531molecular_functionADP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.175
SRR3591706second leaf2.706
SRR3591707mature leaf3.461
SRR3591708Shoot apex3.872
SRR3591709Stem4.041
SRR3591710White floral bud5.361
SRR3591711White flower5.317
SRR3591712Green floral bud3.870
SRR3591713Yellow flower2.688
SRP173429 SRR8316895Juvenile bud stage 2.590
SRR8316896Juvenile bud stage 4.403
SRR8316897Juvenile bud stage 1.741
SRR8316894Third green stage 2.456
SRR8316900Third green stage 6.606
SRR8316901Third green stage 6.319
SRR8316898Complete white stage 1.491
SRR8316899Complete white stage 8.211
SRR8316903Complete white stage 3.703
SRR8316902Silver flowering stage1.557
SRR8316904Silver flowering stage2.829
SRR8316905Silver flowering stage1.108
SRR8316906Gold flowering stage 3.179
SRR8316907Gold flowering stage 3.090
SRR8316908Gold flowering stage 2.517
SRP132670SRR6706286Control3.212
SRR6706287Light intensity 50%4.930
SRR6706288Light intensity 20%4.030
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.825
CNS0095593Slightly white alabastrum(diploid) 22.495
CNS0095594Slightly white alabastrum(diploid) 33.879
CNS0095595Whole white alabastrum(diploid) 23.033
CNS0095596Whole white alabastrum(diploid) 34.012
CNS0095597Whole white alabastrum(diploid) 43.300
CNS0095598Silvery flower (diploied) 14.914
CNS0095599Silvery flower (diploied) 24.140
CNS0095600Silvery flower (diploied) 36.060
CNS0095601Golden flower (diploid) 16.032
CNS0095602Golden flower (diploid) 26.613
CNS0095603Golden flower (diploid) 36.576
CNS0095604Slightly white alabastrum(tetraploid) 14.611
CNS0095605Slightly white alabastrum(tetraploid) 23.430
CNS0095606Slightly white alabastrum(tetraploid) 36.920
CNS0095607Whole white alabastrum(tetraploid) 11.423
CNS0095608Whole white alabastrum(tetraploid) 22.417
CNS0095609Whole white alabastrum(tetraploid) 34.799
CNS0095610Silvery flower (tetraploid) 14.255
CNS0095611Silvery flower (tetraploid) 26.528
CNS0095612Silvery flower (tetraploid) 34.260
CNS0095613Golden flower (tetraploid) 11.310
CNS0095614Golden flower (tetraploid) 24.825
CNS0095615Golden flower (tetraploid) 33.367
CRA001975CRR073297Stem 13.997
CRR073298Stem 25.197
CRR073299Stem 34.959
CRR073300Leaf 14.533
CRR073301Leaf 24.975
CRR073302Leaf 34.644
CRR073303Juvenile bud 16.832
CRR073304Juvenile bud 24.549
CRR073305Juvenile bud 33.874
CRR073306Third green 10.665
CRR073307Third green 21.380
CRR073308Third green 31.332
CRR073309Second white 11.892
CRR073310Second white 22.554
CRR073311Second white 31.185
CRR073312Silver flowering 10.072
CRR073313Silver flowering 21.713
CRR073314Silver flowering 30.714
CRR073315Gold flowering 11.369
CRR073316Gold flowering 21.662
CRR073317Gold flowering 31.662
CRR073318Tawny withering 12.472
CRR073319Tawny withering 22.667
CRR073320Tawny withering 32.100