Gene detail

Detail information of GWHGAAZE001977

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007015750.1	2.19063E-52	F-box and associated interaction domains-containing protein, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9SFC7\|FB135_ARATH	1E-29	F-box protein At3g07870
trEMBL	tr\|A0A061GZP0\|A0A061GZP0_THECC	8E-53	F-box and associated interaction domains-containing protein, putative isoform 1 {ECO:0000313\|EMBL:EOY33369.1}
TAIR10	AT4G12560.2	2E-20	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	66290763	66291980	+
GWHAAZE00000001	mRNA	66290763	66291980	+
GWHAAZE00000001	exon	66290763	66291980	+
GWHAAZE00000001	CDS	66290763	66291980	+

Transcript Sequence
>GWHTAAZE001981 ATGTCTACCACCACTACCGATGAGATAGAATCAATAGTGAGAGATCTTCCCAGAGACATAATAATCGACATCCTCACTAGACTCCCCGTCCGATCAGTTCTCCGTTTCAAATCCGTCTGCAGATCATGGTACGTTATCCTCTCTAACCCTAATTTCACTTCCAAGCACTTCAAAAATCGAACAATTCTCAACAATCGCCACGAAGACCGATGTTTCCTCTTCACTCGTAATTACTCAGACGACAATATCATTAATGGTATTACATTTCTATCTAACGACAAAGCAATCAATGTTCCGATAAAGTTAGAAATTCCATTTCTTAGGAAATCGAAGCCCTTGAGGGTTTCGGGTACTTGCAATGGATTAGTTTGCCTCAGTATTTTGCCTCTCGGGTCGATAATTTTGTTGTGGAACCCGGCTACTAGGGAGTTTAAGGATCTCCCAATTGCTATGATTCCCCGCCCGAAGCAAGGCCCGATTAAGGTTGCTTTAGGGTTCGGGTTTGATCCTGTTGCTGATGATTATAAGGTGTTGAGGATTGTGTATTACTGTTATCCCCTTAACCAGGTTGAGGTTTACTCTCTGAGGTCAAATACGTGGAGGGAGATCAAAAGAACGGTTCAGTTTCTGATTTTCGAATCCGGGTGTAATGTGTATTTGAAGGGGAGGTTTCACTGGAGTGCAATTGGGTTTGGGACGATGAATGGGCGCAAACTGATTGTGTCTTTTGATATGGGTGATGAGAATTTTCGATACATAATGCCGCCTAACTTTGGGTTAGGTGATGATGACAACTACGAGGATGTTTTTAAAGTCAGGTGGACGTCCATGGTTTTGAATGAATCTCTAGCCGTTGTTGATTGTGGCGGAAATGGACCGAACAAGAAGTTTGATGTATGGGTGATGAATGAATATGGAGTGGCGGGTTCTTGGACAAAGTATATGTCTTTTAGATTGAATACAAGGATCGATAGGACTTTGGGGTGTGGGGAAGATGGTAAGATTCTGATAGAGATGGATACCTCTAAGGTGGTGTCATTTGATACTGCTACTCAAACAATGAAGGAGCTTGGGGATCAAAATATAGCTTGTTTTTCGGAGGTTTTTAATCACATGGAAAGCCTACTTCCGATTAGGGGAGGGAAGAACGCTGAAGAGACCAATCTGTGTGAGGTGCGTCCTGATCCTTTCTTTGTTCGTAAGTTTGATTTGGCATAA

Network for GWHGAAZE001977

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	15	56	2.10E-08
PF07734.14	FBA_1	217	360	5.70E-10
PF00641.19	zf-RanBP	303	331	8.70E-10
PF00641.19	zf-RanBP	337	364	1.90E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.631
	SRR3591706	second leaf	9.668
	SRR3591707	mature leaf	13.650
	SRR3591708	Shoot apex	15.653
	SRR3591709	Stem	17.474
	SRR3591710	White floral bud	13.835
	SRR3591711	White flower	16.191
	SRR3591712	Green floral bud	17.147
	SRR3591713	Yellow flower	11.690
SRP173429	SRR8316895	Juvenile bud stage	14.834
	SRR8316896	Juvenile bud stage	18.351
	SRR8316897	Juvenile bud stage	5.463
	SRR8316894	Third green stage	9.045
	SRR8316900	Third green stage	28.617
	SRR8316901	Third green stage	23.236
	SRR8316898	Complete white stage	9.881
	SRR8316899	Complete white stage	39.425
	SRR8316903	Complete white stage	12.315
	SRR8316902	Silver flowering stage	7.105
	SRR8316904	Silver flowering stage	12.052
	SRR8316905	Silver flowering stage	4.269
	SRR8316906	Gold flowering stage	13.252
	SRR8316907	Gold flowering stage	11.879
	SRR8316908	Gold flowering stage	10.199
SRP132670	SRR6706286	Control	18.787
	SRR6706287	Light intensity 50%	19.054
	SRR6706288	Light intensity 20%	19.054
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.817
	CNS0095593	Slightly white alabastrum(diploid) 2	20.914
	CNS0095594	Slightly white alabastrum(diploid) 3	15.735
	CNS0095595	Whole white alabastrum(diploid) 2	17.788
	CNS0095596	Whole white alabastrum(diploid) 3	18.073
	CNS0095597	Whole white alabastrum(diploid) 4	19.480
	CNS0095598	Silvery flower (diploied) 1	22.323
	CNS0095599	Silvery flower (diploied) 2	23.698
	CNS0095600	Silvery flower (diploied) 3	28.024
	CNS0095601	Golden flower (diploid) 1	23.146
	CNS0095602	Golden flower (diploid) 2	31.560
	CNS0095603	Golden flower (diploid) 3	29.588
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.156
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.216
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.537
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.681
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.546
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.555
	CNS0095610	Silvery flower (tetraploid) 1	16.162
	CNS0095611	Silvery flower (tetraploid) 2	16.110
	CNS0095612	Silvery flower (tetraploid) 3	10.623
	CNS0095613	Golden flower (tetraploid) 1	9.271
	CNS0095614	Golden flower (tetraploid) 2	13.719
	CNS0095615	Golden flower (tetraploid) 3	12.505
CRA001975	CRR073297	Stem 1	16.858
	CRR073298	Stem 2	21.716
	CRR073299	Stem 3	22.234
	CRR073300	Leaf 1	23.622
	CRR073301	Leaf 2	16.624
	CRR073302	Leaf 3	20.950
	CRR073303	Juvenile bud 1	23.140
	CRR073304	Juvenile bud 2	18.636
	CRR073305	Juvenile bud 3	24.967
	CRR073306	Third green 1	4.373
	CRR073307	Third green 2	6.350
	CRR073308	Third green 3	4.277
	CRR073309	Second white 1	6.197
	CRR073310	Second white 2	6.178
	CRR073311	Second white 3	5.133
	CRR073312	Silver flowering 1	4.724
	CRR073313	Silver flowering 2	5.306
	CRR073314	Silver flowering 3	4.236
	CRR073315	Gold flowering 1	13.851
	CRR073316	Gold flowering 2	17.860
	CRR073317	Gold flowering 3	14.808
	CRR073318	Tawny withering 1	16.307
	CRR073319	Tawny withering 2	15.535
	CRR073320	Tawny withering 3	15.283