Gene detail

Detail information of GWHGAAZE001983

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO40412.1	2.9713E-122	hypothetical protein CISIN_1g013734mg [Citrus sinensis]
trEMBL	tr\|A0A067DN25\|A0A067DN25_CITSI	1E-122	Uncharacterized protein {ECO:0000313\|EMBL:KDO40412.1}
TAIR10	AT4G19420.1	2E-95	Pectinacetylesterase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	66348881	66351596	-
GWHAAZE00000001	mRNA	66348881	66351596	-
GWHAAZE00000001	exon	66348881	66349029	-
GWHAAZE00000001	exon	66349683	66349788	-
GWHAAZE00000001	exon	66350080	66350133	-
GWHAAZE00000001	exon	66350266	66350329	-
GWHAAZE00000001	exon	66350437	66350561	-
GWHAAZE00000001	exon	66350640	66350726	-
GWHAAZE00000001	exon	66350824	66350903	-
GWHAAZE00000001	exon	66351027	66351153	-
GWHAAZE00000001	exon	66351302	66351384	-
GWHAAZE00000001	exon	66351479	66351596	-
GWHAAZE00000001	CDS	66351479	66351596	-
GWHAAZE00000001	CDS	66351302	66351384	-
GWHAAZE00000001	CDS	66351027	66351153	-
GWHAAZE00000001	CDS	66350824	66350903	-
GWHAAZE00000001	CDS	66350640	66350726	-
GWHAAZE00000001	CDS	66350437	66350561	-
GWHAAZE00000001	CDS	66350266	66350329	-
GWHAAZE00000001	CDS	66350080	66350133	-
GWHAAZE00000001	CDS	66349683	66349788	-
GWHAAZE00000001	CDS	66348881	66349029	-

Transcript Sequence
>GWHTAAZE001987 ATGGTGAAGGCTATTACGTGGTTCTACTTTCTTGTTTGTCTTCTTCTTGTCTTGCTAAAAGCACAAGGTTCCTTTGTGGATCTCACTCGTGTGTACACTGCAGTCGCAAAAGGAGCAGTGTGTCTCGACGGAAGTCCTCCGGCATACCACTTCGATAGGGGAACTGGAGAAGGAATCAACAATTGGTTGGTTTACTTAGAAGGAGGAGGATGGTGTAATTCAGCTGAAGATTGCTCAAATCGTGCACAAACCCATTTTGGATCTTCCCATAAAATGGAAAAGGCGTATTTCAGTGGAATTTTAGACAAAGGACGTGAATCTAATCCAAACTTCTATCATTGGAATAGAATTGTCATTCGATATTGTGATGGGTCTTCTTTTACTGGCGATGTGGAGCAAGTTGACCCGGTATACCGTGTTCACTTTAGAGGAGCAAGGGTCTTTCATGCCATTATGGAAGACCTTCTTGAAAGAGGAATGAAGAATGCATCAAATGCTCTTCTTACGGGATGCTCAGCTGGTGGTTTGGCATCTATATTAAACTGCGATAAATTTCGAGCATTGCTACCCACCAAAGCTAGAGTCAAATGCATGTCCGACGGCGGGTTTTTTCTCTATGCGAGAGATTTTTTTGGAGGATATCACTTTGAAACACATATCTTTGATGAAGTTGTTAGCATACATGGATCTGCAAAGAATTTGCCTCGGTCATGTACTTCAACGTTGAAACCTGGTTTGCTTCAATACGTTTTCGCATTAACGTATCTACCAGAGGGCCAATCCTGGGTCAAATGCCAATATAATGTTAGTTACTGCTCATCTTCCCAAATCAAGAAATTGCAAGGTTTAAGATCAGAATTCTTGCATACAATCTTGAATGGATTGGATAATCATTCCTCTAGAGGATTGTTTATGGACTCTTGCTATGCTCATTGCCAAACTTTATTTGGGCCCAAATGGCAAGGAACTAATGTAAAATTGAATGATAAGGTA

Network for GWHGAAZE001983

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03283.14	PAE	20	244	4.60E-96
PF03283.14	PAE	247	324	7.60E-14
PF02485.22	Branch	37	221	2.20E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19882	NOTUM	Wnt signaling pathway	map04310

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0008375	molecular_function	acetylglucosaminyltransferase activity
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.397
	SRR3591706	second leaf	7.772
	SRR3591707	mature leaf	18.234
	SRR3591708	Shoot apex	9.669
	SRR3591709	Stem	50.940
	SRR3591710	White floral bud	3.287
	SRR3591711	White flower	4.425
	SRR3591712	Green floral bud	2.470
	SRR3591713	Yellow flower	2.827
SRP173429	SRR8316895	Juvenile bud stage	5.913
	SRR8316896	Juvenile bud stage	9.156
	SRR8316897	Juvenile bud stage	1.749
	SRR8316894	Third green stage	3.577
	SRR8316900	Third green stage	9.283
	SRR8316901	Third green stage	9.414
	SRR8316898	Complete white stage	4.369
	SRR8316899	Complete white stage	20.465
	SRR8316903	Complete white stage	11.316
	SRR8316902	Silver flowering stage	4.378
	SRR8316904	Silver flowering stage	7.903
	SRR8316905	Silver flowering stage	3.357
	SRR8316906	Gold flowering stage	7.362
	SRR8316907	Gold flowering stage	8.970
	SRR8316908	Gold flowering stage	4.049
SRP132670	SRR6706286	Control	5.332
	SRR6706287	Light intensity 50%	6.305
	SRR6706288	Light intensity 20%	5.954
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.044
	CNS0095593	Slightly white alabastrum(diploid) 2	8.157
	CNS0095594	Slightly white alabastrum(diploid) 3	5.152
	CNS0095595	Whole white alabastrum(diploid) 2	6.244
	CNS0095596	Whole white alabastrum(diploid) 3	3.016
	CNS0095597	Whole white alabastrum(diploid) 4	5.637
	CNS0095598	Silvery flower (diploied) 1	8.858
	CNS0095599	Silvery flower (diploied) 2	5.341
	CNS0095600	Silvery flower (diploied) 3	7.969
	CNS0095601	Golden flower (diploid) 1	7.294
	CNS0095602	Golden flower (diploid) 2	5.897
	CNS0095603	Golden flower (diploid) 3	5.515
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.502
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.176
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.990
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.817
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.697
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.116
	CNS0095610	Silvery flower (tetraploid) 1	11.346
	CNS0095611	Silvery flower (tetraploid) 2	6.858
	CNS0095612	Silvery flower (tetraploid) 3	3.531
	CNS0095613	Golden flower (tetraploid) 1	2.348
	CNS0095614	Golden flower (tetraploid) 2	6.099
	CNS0095615	Golden flower (tetraploid) 3	2.381
CRA001975	CRR073297	Stem 1	4.623
	CRR073298	Stem 2	5.563
	CRR073299	Stem 3	3.145
	CRR073300	Leaf 1	9.379
	CRR073301	Leaf 2	6.722
	CRR073302	Leaf 3	4.031
	CRR073303	Juvenile bud 1	4.702
	CRR073304	Juvenile bud 2	2.700
	CRR073305	Juvenile bud 3	6.047
	CRR073306	Third green 1	3.488
	CRR073307	Third green 2	2.366
	CRR073308	Third green 3	2.745
	CRR073309	Second white 1	2.323
	CRR073310	Second white 2	2.097
	CRR073311	Second white 3	1.934
	CRR073312	Silver flowering 1	0.586
	CRR073313	Silver flowering 2	0.752
	CRR073314	Silver flowering 3	0.435
	CRR073315	Gold flowering 1	2.113
	CRR073316	Gold flowering 2	2.872
	CRR073317	Gold flowering 3	1.081
	CRR073318	Tawny withering 1	8.716
	CRR073319	Tawny withering 2	14.341
	CRR073320	Tawny withering 3	14.035