Gene detail

Detail information of GWHGAAZE001985

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP38909.1	3.95301E-53	hypothetical protein JCGZ_00666 [Jatropha curcas]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	2E-25	F-box protein CPR30
trEMBL	tr\|A0A067L480\|A0A067L480_JATCU	1E-53	Uncharacterized protein {ECO:0000313\|EMBL:KDP38909.1}
TAIR10	AT4G12560.2	8E-21	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	66399226	66400396	-
GWHAAZE00000001	mRNA	66399226	66400396	-
GWHAAZE00000001	exon	66399226	66399659	-
GWHAAZE00000001	exon	66399736	66400396	-
GWHAAZE00000001	CDS	66399736	66400396	-
GWHAAZE00000001	CDS	66399226	66399659	-

Transcript Sequence
>GWHTAAZE001989 ATGGTTGACTATCTTCTTCTTCCTTCGGAATTGTTGATCGACATCCTCAATAGACTACCACTGGAGACATTGCTACGATGCACAAGCGTATGCAAAACATGGTACTCTTTCATCACGTCCCCTTCTTTCATCACCACCCACCTCCTCAACAACAACAATGGAAGTTACCTAATCGTTACTCCTTCTAACAACAACCCCAGGAAAATTAACTATTACGTATACCAAGATAATGAATCATTCGACGAATGTGTTAAATTGGAGTTCCCAATTGCTCTCAGCCATTCCAAATTTAAGATATTTGGTAGTATTAATGGATTAGTATTAGGCTTGTATGGCGTCCTCATGTTTTTATGGAACCCATCGACTCGGAAACACTTGATCGTTCCGAACCCGGACATTACTTTCAATTCACATGGATGCCATCGGGATTGTATTGGATTCGGTTTCGACCCTTTAAATAATGACTACAAGATTGTCAGGGTGGTTTATCTGATCAAAAAATCCGGTTGCGTAGTTCCACCAGAGGTAGAGGTTTATGAGCTTAGAAGCCACTCTTGGCGAAGAAGCGTTTGCTGGGGAGTTTTCGTATTGTATCAACGAGGATGTTCCACAGGCTTTCATGAACGGTGCGGTACATTGGATTGGGTACAATTCGAAAAGGATAGAATAGCACAACAACGGACATTGTCTGTTGCAGTAGTTGATGAATCACTTTCTTTGATTCACATGAAGTTAGAATCTTGTAGTGTTTGGATGATGGAGGAGTATGGCATAGTAAATTCTTGGACAAAGAAATTAGAGATAAAACTAAGGAGTTTTTATGGACCATGTCAGAGGCCATTACGGTTTACAAGGAATGGCCATGTGTTAATGGCAGCTAGAAGTGGAGATCTGGTTTCTTATGATCCCGAAAGCAAAACAATCAGGGGTCTTGGGATAAATGGAGGGATAAATGGAGATCAACAGTCATTTTACTTTTACATAGATACATATGTGGAGAGCCTAGTCTTGCTTGAAGACTTAGACAGGGTCTTGGAGAGGAAGGGAACTTCCCTTTTGCCTAACAAGAGGATGAAATATTCTACATATTCTTGA

Network for GWHGAAZE001985

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	6	45	2.60E-10
PF00153.28	Mito_carr	519	598	9.30E-09
PF00153.28	Mito_carr	605	690	9.80E-19

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.119
	SRR3591706	second leaf	0.836
	SRR3591707	mature leaf	1.453
	SRR3591708	Shoot apex	0.430
	SRR3591709	Stem	1.046
	SRR3591710	White floral bud	1.009
	SRR3591711	White flower	0.656
	SRR3591712	Green floral bud	1.250
	SRR3591713	Yellow flower	0.454
SRP173429	SRR8316895	Juvenile bud stage	0.807
	SRR8316896	Juvenile bud stage	1.120
	SRR8316897	Juvenile bud stage	0.948
	SRR8316894	Third green stage	0.572
	SRR8316900	Third green stage	1.492
	SRR8316901	Third green stage	1.252
	SRR8316898	Complete white stage	0.354
	SRR8316899	Complete white stage	0.660
	SRR8316903	Complete white stage	0.269
	SRR8316902	Silver flowering stage	0.188
	SRR8316904	Silver flowering stage	0.352
	SRR8316905	Silver flowering stage	0.123
	SRR8316906	Gold flowering stage	0.656
	SRR8316907	Gold flowering stage	0.349
	SRR8316908	Gold flowering stage	0.465
SRP132670	SRR6706286	Control	0.804
	SRR6706287	Light intensity 50%	0.852
	SRR6706288	Light intensity 20%	0.623
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.071
	CNS0095593	Slightly white alabastrum(diploid) 2	0.992
	CNS0095594	Slightly white alabastrum(diploid) 3	2.468
	CNS0095595	Whole white alabastrum(diploid) 2	1.290
	CNS0095596	Whole white alabastrum(diploid) 3	1.416
	CNS0095597	Whole white alabastrum(diploid) 4	1.572
	CNS0095598	Silvery flower (diploied) 1	0.201
	CNS0095599	Silvery flower (diploied) 2	0.502
	CNS0095600	Silvery flower (diploied) 3	0.320
	CNS0095601	Golden flower (diploid) 1	0.739
	CNS0095602	Golden flower (diploid) 2	0.519
	CNS0095603	Golden flower (diploid) 3	1.129
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.066
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.745
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.525
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.639
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.266
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.432
	CNS0095610	Silvery flower (tetraploid) 1	0.641
	CNS0095611	Silvery flower (tetraploid) 2	0.951
	CNS0095612	Silvery flower (tetraploid) 3	0.681
	CNS0095613	Golden flower (tetraploid) 1	0.277
	CNS0095614	Golden flower (tetraploid) 2	0.477
	CNS0095615	Golden flower (tetraploid) 3	0.394
CRA001975	CRR073297	Stem 1	0.354
	CRR073298	Stem 2	0.442
	CRR073299	Stem 3	0.487
	CRR073300	Leaf 1	0.791
	CRR073301	Leaf 2	0.815
	CRR073302	Leaf 3	0.139
	CRR073303	Juvenile bud 1	0.332
	CRR073304	Juvenile bud 2	0.702
	CRR073305	Juvenile bud 3	0.249
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.706
	CRR073308	Third green 3	0.153
	CRR073309	Second white 1	0.036
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.193
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.306
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.042
	CRR073316	Gold flowering 2	0.094
	CRR073317	Gold flowering 3	0.373
	CRR073318	Tawny withering 1	0.498
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.219