Gene detail

Detail information of GWHGAAZE001986

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009619158.1	4.06035E-68	PREDICTED: F-box protein At3g07870-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	1E-33	F-box protein CPR30
trEMBL	tr\|M1BWG5\|M1BWG5_SOLTU	3E-68	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400054509}
TAIR10	AT4G12560.2	2E-30	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	66409360	66410514	-
GWHAAZE00000001	mRNA	66409360	66410514	-
GWHAAZE00000001	exon	66409360	66410514	-
GWHAAZE00000001	CDS	66409360	66410514	-

Transcript Sequence
>GWHTAAZE001990 ATGTCTTCGGACTATCTACCTGCCGAATTGTTGACCGAAATTCTCACCAGACTACCTGTAAAGACCTTGCTGCGATGCACAAGCCTCTCCAAATCATGGTATTCTTTCATCACTTCCCCCAATTTTATCACCACACACCTCAATCGAACAATCTCAAACACCCAATCTCACCTATTAATCGTTAGGCAGTGCGCAGAAGTGATTAAAGATAAGTGGACAGAACACTACTCTCTACATTGCGATAATGATGCATTTGATGAATTTGCTAAATTGGATTTCCCGTTCGTTTGTAGAAATGGCTGCTTTAATATAATTGGTACTTGTAATGGATTAGTTTGCTTGTCTGACGATCATGGAACTAACACAGACTTACTCTTATGGAACCCCTCTATTAAAAAATCAGTCACCCTCACCCTTCCGAACCCCAGCTTTGTATGCGAGTCCCACGGCCATTTCGGATTTGGAATCAACCCTATAACCAGCGAGTACAAGATTGTGAGGCTTGTGTATCTATATACATATAGACCGCCAAAGGTAGAGCTTTTTGAGCTTTGCACCGGCTCTTGGCAAAATATTAATACCAGAGACTTTTCGTATATTATTTATCCTCATGCTCGACAGGCCTTTTTGAATGGTGTTGTCCACTGGACTGGATATAATCCGAACAAGGCTGGTGGTAGTAGACATATTCTGATCGTGTCTTTTGACATGAGAAATGACTCACTAGGTGTACTAATGGTACCACCTTGTGTATGGCAATACTGGGACCACTGTTTCATGTGTGTCACAGTATTTGGAGAATGGCTTGCTTTTTTACATCCTGATGGAGATTATTATTGGTGCCTATGGGTGATGAAGGACTATGGCGTAGAAAACTCTTGGACAAAGCAGTTCAATGTTGATGCACGAGTGGGTTTCCTGCGACCAATTTACTTCAGAGAGAATGGTGATATCTTATTGGAGGTAAGAGGTGGGTATTATGGAGGGTGGGATTTGTTTTCCTATGTTCGCAGAAGTAAACTGATCAATAATTTCAACATACCTGGAATGATATGGTCATTCGATGTAGATACTTACAAGGAGAGCCTTGTCTTAACTAAGGGTTTAAATGAAGTCCTGGGTGGGAAGGAAAATTCAGGTGGTGTAGCCACTTGA

Network for GWHGAAZE001986

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	6	44	5.30E-08
PF07734.14	FBA_1	209	303	3.70E-05
PF04182.13	B-block_TFIIIC	113	194	2.50E-17

Protein Sequence

>GWHPAAZE017292
MDSIVHVALEEICSEGVNGLTLPDLWPKLQSSLSSNGLHLCTNVKKAIWTNLLNIPGLQFKSRSISYSAQGSSIQSFENSEELSLKIVAAEQLRNSFIGIYDIKASNAGISQPQRRALERLAIARTNGITQSELAKEFGMKGNNIFYVLRKLECRGLIVRQSTVLRKKEICNEGEAKNSSIVNTNMLHLYRYTKHLGCQQRMEITKEDKTSITNENADAASGAGVAEECVREDVIIKDFLPALKAICDKLEKADGKNLVTEEIQGIERGEMLKDARVVEEFLAKVNNKEVSCLRLLKKFSPKNFEPKTHGCQINDQLVDLPIEHQIYDMIDAEGSKGLKITEAESHNRGAAYRVWTSGNLASEASNIILTPECDNRAFTQHDSVVVEAAISHGPPTDGECSDMIRCPSSSLNLDQELSSSIVPDTELQIVRKTTESSPDLSEKSTPRRRRRRRSYMKYPCLALTAVSTQREQRILELLKEEKFIIKADLHRQLENLEKDKHTMMDRRTLERSLNKLQEEGHCKCIKVSVPVVSNCGRSRTTDVVLHPAFKDVSPELLVEIHDRVRSFDMEIRGQGFSRLKKGHSLPLLDGVQRTTVDSVKPSQAERSEAMRANGFVLAKMVRLKLLHIFLWGYLNGLPGWDEALLSGEHGYDQKNPHSTCKTFELEAAIKLGLRLSDLPVMEYKLLMDTQATGRLSYLMDILRRPKLMRMVSVEHSEDAAPHATLTYALELKPYIEEPVTMVKPSSGFIMSFDFRPQIRHDFVLSSRDAVDEYWNTLEYCYAAADSKAALLAFPGSAVHEVFLFRSWVSVRVMTAEQRAELLKRIVNEDSNKKLSFKECEKIAKDLNLTLEQISHSFALFDWVPDLRACSWKVLRVYYDKQQKRISKEVLNAKEDEYLILKKKRASSSRKRKRSSQRRSSKKVHTLDGESIEQRHEKLSDTDDQLTEERSPFLTSSGEHGKHKPSHQVNDHMEAIEEPGSNEEDEDGDSFVRKVVPRLNPTRRSKFSWTEEADRQLVIEYVRHCAVLGAKFNRVDWPSLRNLPAPTNTCKRRMALLNSCIQFRKSTMRLCNMLSERYLKYLDKFQNKSLSKGDCRVMVRNCSSGKDCSRNISNILEHTEEFDSEATWDDFNNINIKMALDEVLLYKRMAKLDVSHVEEYSNLNTDAEGYLQDSQGTKIVSSAPNGEVHRCSGTVKVSGRKLTRHRLPRKYIKLLNEGISVSRRVYESLAVSNAAELFKLVFLSTSTAPEVPNLLAETLQRYSEHDLFAAFHYLREKKIMIGGNGSSPFVLSQQFLQRISSSPFPSNTGKRAAKFANWLRERQKDLMEEGIDLTADLQCGDILHLFAQVTSGDLLIQPFLPDQGVGEAEDSRTLKRKSDELFGGDKSKKSKTSLAGEGTTVTSDSPPLDHMKELLSFGYTVPSNMDTNESPFEAMAQYAKLVAFFPFNQEQGSPFCSELFRTVYSAIQKAGDQGLSIEEISVGMNMDGETMLGLIIEVLETFGRALKVNAYDSFRVVDSLYHSKYFLTPVSGLHQDPKVEPLKNPERIIGDEQLILQLENHKDDGLNVHKETSTSSDEMHRVAILNLPEEVAQPSSEIQSISEIEGSTQARAISPESNQEGETSDLRVCDSNLSRPILPWINGDGTINEIVYKGLVPAFLVL

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.480
	SRR3591706	second leaf	0.292
	SRR3591707	mature leaf	0.458
	SRR3591708	Shoot apex	1.143
	SRR3591709	Stem	0.772
	SRR3591710	White floral bud	0.856
	SRR3591711	White flower	0.939
	SRR3591712	Green floral bud	1.119
	SRR3591713	Yellow flower	0.722
SRP173429	SRR8316895	Juvenile bud stage	1.014
	SRR8316896	Juvenile bud stage	1.538
	SRR8316897	Juvenile bud stage	0.323
	SRR8316894	Third green stage	0.687
	SRR8316900	Third green stage	1.215
	SRR8316901	Third green stage	1.422
	SRR8316898	Complete white stage	0.298
	SRR8316899	Complete white stage	0.795
	SRR8316903	Complete white stage	0.521
	SRR8316902	Silver flowering stage	0.325
	SRR8316904	Silver flowering stage	0.393
	SRR8316905	Silver flowering stage	0.236
	SRR8316906	Gold flowering stage	0.763
	SRR8316907	Gold flowering stage	0.519
	SRR8316908	Gold flowering stage	0.870
SRP132670	SRR6706286	Control	1.439
	SRR6706287	Light intensity 50%	1.550
	SRR6706288	Light intensity 20%	1.603
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.722
	CNS0095593	Slightly white alabastrum(diploid) 2	1.324
	CNS0095594	Slightly white alabastrum(diploid) 3	2.595
	CNS0095595	Whole white alabastrum(diploid) 2	0.739
	CNS0095596	Whole white alabastrum(diploid) 3	1.130
	CNS0095597	Whole white alabastrum(diploid) 4	0.498
	CNS0095598	Silvery flower (diploied) 1	0.861
	CNS0095599	Silvery flower (diploied) 2	0.162
	CNS0095600	Silvery flower (diploied) 3	0.344
	CNS0095601	Golden flower (diploid) 1	0.820
	CNS0095602	Golden flower (diploid) 2	0.451
	CNS0095603	Golden flower (diploid) 3	0.628
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.082
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.810
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.733
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.726
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.208
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.703
	CNS0095610	Silvery flower (tetraploid) 1	0.628
	CNS0095611	Silvery flower (tetraploid) 2	0.953
	CNS0095612	Silvery flower (tetraploid) 3	1.144
	CNS0095613	Golden flower (tetraploid) 1	0.672
	CNS0095614	Golden flower (tetraploid) 2	0.523
	CNS0095615	Golden flower (tetraploid) 3	0.251
CRA001975	CRR073297	Stem 1	1.173
	CRR073298	Stem 2	0.423
	CRR073299	Stem 3	1.626
	CRR073300	Leaf 1	0.933
	CRR073301	Leaf 2	1.142
	CRR073302	Leaf 3	0.929
	CRR073303	Juvenile bud 1	0.494
	CRR073304	Juvenile bud 2	0.357
	CRR073305	Juvenile bud 3	0.626
	CRR073306	Third green 1	0.258
	CRR073307	Third green 2	0.036
	CRR073308	Third green 3	0.088
	CRR073309	Second white 1	0.116
	CRR073310	Second white 2	0.162
	CRR073311	Second white 3	0.058
	CRR073312	Silver flowering 1	0.099
	CRR073313	Silver flowering 2	0.091
	CRR073314	Silver flowering 3	0.058
	CRR073315	Gold flowering 1	1.167
	CRR073316	Gold flowering 2	0.531
	CRR073317	Gold flowering 3	0.291
	CRR073318	Tawny withering 1	0.080
	CRR073319	Tawny withering 2	0.809
	CRR073320	Tawny withering 3	0.744