Gene detail

Detail information of GWHGAAZE001992

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009412893.1	1.84563E-50	PREDICTED: peptidyl-prolyl cis-trans isomerase [Musa acuminata subsp. malaccensis]
COG	YP_005366669.1	1E-42	peptidyl-prolyl cis-trans isomerase
Swissprot	tr\|P21568\|CYPH_SOLLC	2E-50	Peptidyl-prolyl cis-trans isomerase
trEMBL	tr\|A0A067KXB4\|A0A067KXB4_JATCU	2E-50	Peptidyl-prolyl cis-trans isomerase {ECO:0000256\|RuleBase:RU000493}
TAIR10	AT2G21130.1	2E-32	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	66525680	66526000	-
GWHAAZE00000001	mRNA	66525680	66526000	-
GWHAAZE00000001	exon	66525680	66526000	-
GWHAAZE00000001	CDS	66525680	66526000	-

Transcript Sequence
>GWHTAAZE001996 ATGGCCATCGGTGGTGCACCGGTCGGTAGGATCGTCATGGAGCTCTACACTAACCCCACTCCCGGTATCGCCAAGAACTTCCGAGCTCTCTGCACTGGTGAGAAGGGATTCTGCAAGTCCGACAAGCCCTTGCACTATAAAGGGTCGTGTTTCGACCGCGTGATCCCCGGATTCATGTGCCAGGGAGGCGATTTCACCACCGGTAACGGCACCGGAGGAGAGTCGATCTACGGCGTGAAGTTCACTGACGAGAACTTCATCAAGAAGCACACTGGTCCCGGCGTTCTGTCGTCGTGTTTGGACAAATTGTTGAAGGAATAG

Network for GWHGAAZE001992

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00160.22	Pro_isomerase	8	97	2.20E-16
PF00010.27	HLH	41	80	1.20E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000413	biological_process	protein peptidyl-prolyl isomerization
GO:0046983	molecular_function	protein dimerization activity
GO:0003755	molecular_function	peptidyl-prolyl cis-trans isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.015
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.196
	SRR3591709	Stem	0.711
	SRR3591710	White floral bud	0.076
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.332
	SRR3591713	Yellow flower	0.177
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.208
	SRR8316897	Juvenile bud stage	0.032
	SRR8316894	Third green stage	0.107
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.065
	SRR6706288	Light intensity 20%	0.025
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.062
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.127
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.446
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.367
	CRR073316	Gold flowering 2	1.392
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.044
	CRR073319	Tawny withering 2	0.686
	CRR073320	Tawny withering 3	0.255