Gene detail

Detail information of GWHGAAZE001998

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15967.1	1.0656E-105	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SFC7\|FB135_ARATH	2E-31	F-box protein At3g07870
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	4E-106	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT3G07870.1	9E-29	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	66761097	66762425	+
GWHAAZE00000001	mRNA	66761097	66762425	+
GWHAAZE00000001	exon	66761097	66761725	+
GWHAAZE00000001	exon	66761864	66762425	+
GWHAAZE00000001	CDS	66761097	66761725	+
GWHAAZE00000001	CDS	66761864	66762425	+

Transcript Sequence
>GWHTAAZE002002 ATGTCAGATTACATTCCCCAAGAGTTAGTCCTTCAAATCCTCTCATGGTTACCTCCAAAGTCCCTGCTCCGCTTCAGGTGCGTTTGTAAATCTTGGTGTTCCCTTATTACAAGCCCTAATTTCATCCATATTCACACACGCAACCTCAGTGTTCCCAACTGCATCACCAACACTCGCAAACTCATCAGGCACTGCACTATATCTCCTCTCAGCAAAGACGTCTATTCGGTACATTTCGATGACCGATCGTTCGACCTTGATTATACTGTCGAAATCGATTTCCCCTTTAATAACAAACGCTATTATGAAATTGTGGGTTCTTGTAATGGTCTGATTTGCCTCTCGGATGATGTACGTGGCTACACAAATACTATTATTCTATGGAACCCTGCAATCAGGAGAAAATTGACCCTTCCCCTGCCCCAGGGTGTACTAAAGAACTTGGGATCTTATATGTTTGTTCTTGGATTTGGGTTTGATTGTGAGGCTGATGATTACAAGATTCTCAGACTTTCGTATAGGAAATGCGGTGATATGGTTATAGTGCCCCCATTAGTTGAGGTTTATACTGTTAAAACTGGGGCATGGAGGACCATCAGTGCTCCAGCTCCTCAATTTATTATTGCCGGGTACTACGGCCGGCAGGCTTATGTTAATGGGGCTGCACATTGGGTCGCGTATCCTCCGAACTATAGATGCACACGCAGTTTGATTTTGTCGTTTGATATGTGTAATGAGGTCTTTCGTGAGATTATGTTGCCCAGATGTTTAGTGGGCGAATCTGCTTGGTACATGGAGGTGGTTGTGATACAAGATTCATTAGCTGTTGTAGAATATGACAAATCCCTTAACATGCGTTCGGTTTGGGTGATGAAAGAGTATGGTGTGGTCGAGTCCTGGACAAAGCTATATAATATTGATACAGAGGTTGGTTTGGGGATAATGCTTGGTGTCCGGAGGAATGGTGAAGTGTTATTGACAACAAGAAATGAAGAGCTGGTAGATTATAATGTGCAGACCGGAGAAAGCGTGAACCTTATCACCAATGGGATTAAGAATAACTTTTTGCGGATTCTTACAAGGAGAGCTTGCTTTACTCTTCAAGGAGAAAAACTGAAATCTAGGGAGGTGGTTGGGCTTACTTTGGATCTCATTCGCCTAGAGAGGAGAGTTGAATTTTGGATAACTTAG

Network for GWHGAAZE001998

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	6	41	1.50E-10
PF07734.14	FBA_1	217	323	3.00E-08
PF00335.21	Tetraspanin	1	196	5.10E-24

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.555
	SRR3591706	second leaf	0.248
	SRR3591707	mature leaf	0.138
	SRR3591708	Shoot apex	1.561
	SRR3591709	Stem	0.846
	SRR3591710	White floral bud	0.951
	SRR3591711	White flower	0.853
	SRR3591712	Green floral bud	0.727
	SRR3591713	Yellow flower	0.079
SRP173429	SRR8316895	Juvenile bud stage	0.628
	SRR8316896	Juvenile bud stage	0.554
	SRR8316897	Juvenile bud stage	0.045
	SRR8316894	Third green stage	0.291
	SRR8316900	Third green stage	0.631
	SRR8316901	Third green stage	0.559
	SRR8316898	Complete white stage	0.199
	SRR8316899	Complete white stage	1.097
	SRR8316903	Complete white stage	0.418
	SRR8316902	Silver flowering stage	0.127
	SRR8316904	Silver flowering stage	0.391
	SRR8316905	Silver flowering stage	0.091
	SRR8316906	Gold flowering stage	0.334
	SRR8316907	Gold flowering stage	0.494
	SRR8316908	Gold flowering stage	0.431
SRP132670	SRR6706286	Control	0.571
	SRR6706287	Light intensity 50%	0.742
	SRR6706288	Light intensity 20%	0.792
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.320
	CNS0095593	Slightly white alabastrum(diploid) 2	0.433
	CNS0095594	Slightly white alabastrum(diploid) 3	0.613
	CNS0095595	Whole white alabastrum(diploid) 2	0.716
	CNS0095596	Whole white alabastrum(diploid) 3	0.838
	CNS0095597	Whole white alabastrum(diploid) 4	0.320
	CNS0095598	Silvery flower (diploied) 1	0.724
	CNS0095599	Silvery flower (diploied) 2	0.500
	CNS0095600	Silvery flower (diploied) 3	0.556
	CNS0095601	Golden flower (diploid) 1	1.276
	CNS0095602	Golden flower (diploid) 2	0.500
	CNS0095603	Golden flower (diploid) 3	0.782
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.582
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.673
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.908
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.856
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.326
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.555
	CNS0095610	Silvery flower (tetraploid) 1	0.896
	CNS0095611	Silvery flower (tetraploid) 2	0.779
	CNS0095612	Silvery flower (tetraploid) 3	1.284
	CNS0095613	Golden flower (tetraploid) 1	0.237
	CNS0095614	Golden flower (tetraploid) 2	0.618
	CNS0095615	Golden flower (tetraploid) 3	0.034
CRA001975	CRR073297	Stem 1	0.694
	CRR073298	Stem 2	0.794
	CRR073299	Stem 3	0.980
	CRR073300	Leaf 1	0.389
	CRR073301	Leaf 2	0.645
	CRR073302	Leaf 3	0.667
	CRR073303	Juvenile bud 1	0.907
	CRR073304	Juvenile bud 2	0.599
	CRR073305	Juvenile bud 3	0.711
	CRR073306	Third green 1	0.816
	CRR073307	Third green 2	0.695
	CRR073308	Third green 3	0.483
	CRR073309	Second white 1	0.539
	CRR073310	Second white 2	0.197
	CRR073311	Second white 3	0.283
	CRR073312	Silver flowering 1	0.049
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.032
	CRR073315	Gold flowering 1	0.055
	CRR073316	Gold flowering 2	0.202
	CRR073317	Gold flowering 3	0.260
	CRR073318	Tawny withering 1	0.735
	CRR073319	Tawny withering 2	0.822
	CRR073320	Tawny withering 3	0.491