Gene detail

Detail information of GWHGAAZE001999

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP09582.1	6.58097E-50	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q6DR20\|FB110_ARATH	6E-16	F-box protein At2g17036
trEMBL	tr\|A0A068UMQ5\|A0A068UMQ5_COFCA	2E-50	Coffea canephora DH200=94 genomic scaffold, scaffold_39 {ECO:0000313\|EMBL:CDP09582.1}
TAIR10	AT2G17036.1	8E-15	F-box family protein with a domain of unknown function (DUF295)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	66766969	66768075	+
GWHAAZE00000001	mRNA	66766969	66768075	+
GWHAAZE00000001	exon	66766969	66768075	+
GWHAAZE00000001	CDS	66766969	66768075	+

Transcript Sequence
>GWHTAAZE002003 ATGGAGAATGCCAAAACAAAGGATTGGTCTCAATTACCATCCGATCTGCTCCTTTCCATCACAAATCGATTAGGTGCTTTCGAGGATTTTGTTGCATTTTCATCTGTGTGTACCTCTTGGCGATCGGCTCTCTCTAAAGAACAAAACTGGTCAAACAGCTGTGTTCCATGGCTCCTTCTTCGCGAACCCCATTTTTCCCACGTACACGCCAACTACTTGTTCATTCCTACCAGAAAGAAGAGGAAGAAGAGATACACTATCAAAGAGTCACTCATAGATAACGCAAAGCGCTGTTGGGGATCTTCTTTCGGTTGGATCTTCACTCTGGCTCATGATTATACCACAGCACTCGTCAACCCCTTAACCGGATTTCAAATCACTCTTCCCTGCCTTTCGAAATCTATAACAAGATCCCTAGTATTCGTTAATGGTTCTGATAAAAATGACAACGGAAATAACATCACCATCATGGTAATTTACGATTATAGAGATCAATACAGGTTAGCCTTTGCTAGGCCAGGTTTCTGTGAATGGATTACTCTACAAGATAACGAAAATGGTGGCTTTGCTGATGTGGCCTGCTACAAGGATAAGATCTTTGGGGTTCGCGCCAACGGGACTCTTGTGATGTGTGAGACCGATAATGTATTGTATCCTATGGTTGCTAATTTTGCTCCTCCACCCAAGCTCATAAATTTCAATAATGTAGGGAGGGTTTATTTGATCGAATCTGCAGGAGATTTACTTATGGCATTGGTGAGGGAGAAATTTAGTGATAAGAAGGAAGCCTTTGAAGTTTATATCTTCAATATGGAGACTAGAAGATGGAGGGAATTGGATGATTTGGGAGACCGAGCATTATTCTTGGGCGATAATTATTCAATTTCTGTGTTTCCGGCCAATGGGGTTGATTGCACTGCTAATTGTATTTATTTCAGTACGAAGATGAGGTTAATCGTATTTTATATGAAGGATAGGCGACTAGTGGTGTATGGTTTTACTTATTATAGAGGGAAATACAGTTGTTCTGTGTCGACCGATTCCCTAGCTAGCCTTCTTCATCGGTCAAATTGGGGGTCAGTTTGGGTAAGGCCTAGATTATCATAA

Network for GWHGAAZE001999

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	8	54	5.70E-08
PF03478.19	DUF295	277	316	2.70E-12
PF00076.23	RRM_1	4	61	1.60E-15
PF00098.24	zf-CCHC	110	125	1.50E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K12896	SFRS7	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.159
	SRR3591706	second leaf	1.139
	SRR3591707	mature leaf	0.395
	SRR3591708	Shoot apex	1.680
	SRR3591709	Stem	0.552
	SRR3591710	White floral bud	2.524
	SRR3591711	White flower	0.311
	SRR3591712	Green floral bud	1.166
	SRR3591713	Yellow flower	0.133
SRP173429	SRR8316895	Juvenile bud stage	1.670
	SRR8316896	Juvenile bud stage	1.956
	SRR8316897	Juvenile bud stage	0.202
	SRR8316894	Third green stage	1.133
	SRR8316900	Third green stage	3.643
	SRR8316901	Third green stage	2.109
	SRR8316898	Complete white stage	1.188
	SRR8316899	Complete white stage	3.012
	SRR8316903	Complete white stage	1.011
	SRR8316902	Silver flowering stage	0.302
	SRR8316904	Silver flowering stage	0.300
	SRR8316905	Silver flowering stage	0.399
	SRR8316906	Gold flowering stage	0.835
	SRR8316907	Gold flowering stage	1.700
	SRR8316908	Gold flowering stage	0.205
SRP132670	SRR6706286	Control	3.278
	SRR6706287	Light intensity 50%	3.035
	SRR6706288	Light intensity 20%	3.652
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.598
	CNS0095593	Slightly white alabastrum(diploid) 2	2.250
	CNS0095594	Slightly white alabastrum(diploid) 3	3.315
	CNS0095595	Whole white alabastrum(diploid) 2	2.184
	CNS0095596	Whole white alabastrum(diploid) 3	3.129
	CNS0095597	Whole white alabastrum(diploid) 4	2.275
	CNS0095598	Silvery flower (diploied) 1	1.663
	CNS0095599	Silvery flower (diploied) 2	1.270
	CNS0095600	Silvery flower (diploied) 3	0.933
	CNS0095601	Golden flower (diploid) 1	2.012
	CNS0095602	Golden flower (diploid) 2	0.904
	CNS0095603	Golden flower (diploid) 3	0.850
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.690
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.971
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.172
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.124
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.507
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.735
	CNS0095610	Silvery flower (tetraploid) 1	1.849
	CNS0095611	Silvery flower (tetraploid) 2	2.140
	CNS0095612	Silvery flower (tetraploid) 3	2.899
	CNS0095613	Golden flower (tetraploid) 1	1.219
	CNS0095614	Golden flower (tetraploid) 2	2.235
	CNS0095615	Golden flower (tetraploid) 3	1.945
CRA001975	CRR073297	Stem 1	2.711
	CRR073298	Stem 2	2.843
	CRR073299	Stem 3	3.999
	CRR073300	Leaf 1	3.652
	CRR073301	Leaf 2	3.307
	CRR073302	Leaf 3	3.931
	CRR073303	Juvenile bud 1	4.661
	CRR073304	Juvenile bud 2	7.309
	CRR073305	Juvenile bud 3	2.209
	CRR073306	Third green 1	0.328
	CRR073307	Third green 2	1.055
	CRR073308	Third green 3	0.785
	CRR073309	Second white 1	0.168
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	1.000
	CRR073313	Silver flowering 2	0.294
	CRR073314	Silver flowering 3	0.230
	CRR073315	Gold flowering 1	1.259
	CRR073316	Gold flowering 2	0.711
	CRR073317	Gold flowering 3	0.914
	CRR073318	Tawny withering 1	0.512
	CRR073319	Tawny withering 2	0.580
	CRR073320	Tawny withering 3	0.176