Gene detail

Detail information of GWHGAAZE002000

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15967.1	4.113E-112	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	9E-32	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	2E-112	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT3G06240.1	6E-29	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	66901085	66902350	+
GWHAAZE00000001	mRNA	66901085	66902350	+
GWHAAZE00000001	exon	66901085	66901670	+
GWHAAZE00000001	exon	66901809	66902350	+
GWHAAZE00000001	CDS	66901085	66901670	+
GWHAAZE00000001	CDS	66901809	66902350	+

Transcript Sequence
>GWHTAAZE002004 ATGTCAGATTACATTCCCCAAGAGTTAGTCCTTCAAATCCTCTCATGGTTACCTCCAAAGTCCCTGCTCCGCTTCAGGTGCGTTTGTAAATCTTGGTGTTCCCTTATTACAAGCCCTAATTTCATCCATATTCACACACGCAACCTCAGTGTTCCCAACTGCATCACCAACACTCGCAAACTCATCAGGCACTGCACTATATCTCCTCTCAGCAAAGACGTCTATTCGGTACATTTCGATGACCGATCGTTCGACCTTGATTATACTGTCGAAATCGATTTCCCCTTTAATAACAAACGCTATTATGAAATTGTGGGTTCTTGTAATGGTCTGATTTGCCTCTCGGATGATGTACGTGGCTACACAAATACTATTATTCTATGGAACCCTGCAATCAGGAGAAAATTGACCCTTCCCCTGCCCCAGGGTGTACTAAAGAACTTGGGATCCTATATGTTTGTTCTTGGATTTGGGTTTGATTGTGAGGCTGATGATTACAAGATTGTCAGACTTTCGTATAGGAAACGCGGTGATATGGTTATAGTGCCCCCATTAGTTGAGGTTTATACTGTTAAAACTGGGGCATGGAGGGGCATCAGTTCTCCAACTCCTCTATTTAATATATCTGGGTACTACGGCCGGCAGGCTTATGTTAATGGGGCTGCACATTGGGTTGCGTATCCTCCGAACTATAGATGCACCCGCAGTTTGATTTTGTCGTTTGATATGTGTAATGAGGTCTTTCGTGAGATTATGTTGCCCAGATGTTTAGTGGGCGAATCCGCTTGGTACATGGAGGTGGTTGTGATACAAGATTCATTAGCTGTTGTAGAATATGACAAATCCCTTAACATGCGTTCAGTTTGGGTGATGAAAGAGTACGGTGTGGTCGAGTCCTGGACAAAGCGATATAATATTGATACAGAGGTTGGTTTGGGGATAATGCTTGGTGTCCGGAGGAATGGTGAAGTGTTATTGACTACAAGAAATGAAGAGCTTGTAGATTATAATGTGCAGACCGGAGAAAGCGTGAACCTTATCACCAATGGGATTAAGAATAACTTTTTTGTGGATTCTTACAAGGAGAGCTTCGCTTTACTCTTCGAAGGAGAAAAAACTGAAATCTAG

Network for GWHGAAZE002000

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	6	41	1.40E-10
PF07734.14	FBA_1	217	312	1.90E-07
PF09439.11	SRPRB	20	200	4.00E-35

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K12272	SRPRB, SRP102	Protein export	map03060

Gene Ontology

GO term	Ontology	Name
GO:0005525	molecular_function	GTP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.104
	SRR3591706	second leaf	0.353
	SRR3591707	mature leaf	0.135
	SRR3591708	Shoot apex	1.316
	SRR3591709	Stem	1.004
	SRR3591710	White floral bud	0.659
	SRR3591711	White flower	0.496
	SRR3591712	Green floral bud	0.469
	SRR3591713	Yellow flower	0.098
SRP173429	SRR8316895	Juvenile bud stage	0.769
	SRR8316896	Juvenile bud stage	0.601
	SRR8316897	Juvenile bud stage	0.568
	SRR8316894	Third green stage	0.454
	SRR8316900	Third green stage	0.642
	SRR8316901	Third green stage	0.603
	SRR8316898	Complete white stage	0.017
	SRR8316899	Complete white stage	2.096
	SRR8316903	Complete white stage	0.383
	SRR8316902	Silver flowering stage	0.133
	SRR8316904	Silver flowering stage	0.225
	SRR8316905	Silver flowering stage	0.047
	SRR8316906	Gold flowering stage	0.082
	SRR8316907	Gold flowering stage	0.372
	SRR8316908	Gold flowering stage	3.927
SRP132670	SRR6706286	Control	0.542
	SRR6706287	Light intensity 50%	1.010
	SRR6706288	Light intensity 20%	1.236
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.614
	CNS0095593	Slightly white alabastrum(diploid) 2	0.662
	CNS0095594	Slightly white alabastrum(diploid) 3	0.330
	CNS0095595	Whole white alabastrum(diploid) 2	0.512
	CNS0095596	Whole white alabastrum(diploid) 3	0.429
	CNS0095597	Whole white alabastrum(diploid) 4	0.217
	CNS0095598	Silvery flower (diploied) 1	1.210
	CNS0095599	Silvery flower (diploied) 2	0.722
	CNS0095600	Silvery flower (diploied) 3	0.483
	CNS0095601	Golden flower (diploid) 1	0.540
	CNS0095602	Golden flower (diploid) 2	0.567
	CNS0095603	Golden flower (diploid) 3	0.477
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.220
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.048
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.407
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.039
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.087
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.134
	CNS0095610	Silvery flower (tetraploid) 1	0.161
	CNS0095611	Silvery flower (tetraploid) 2	0.242
	CNS0095612	Silvery flower (tetraploid) 3	0.469
	CNS0095613	Golden flower (tetraploid) 1	0.047
	CNS0095614	Golden flower (tetraploid) 2	0.091
	CNS0095615	Golden flower (tetraploid) 3	0.028
CRA001975	CRR073297	Stem 1	0.663
	CRR073298	Stem 2	0.749
	CRR073299	Stem 3	0.986
	CRR073300	Leaf 1	0.820
	CRR073301	Leaf 2	1.040
	CRR073302	Leaf 3	0.843
	CRR073303	Juvenile bud 1	2.020
	CRR073304	Juvenile bud 2	0.475
	CRR073305	Juvenile bud 3	1.382
	CRR073306	Third green 1	0.334
	CRR073307	Third green 2	0.116
	CRR073308	Third green 3	0.045
	CRR073309	Second white 1	0.124
	CRR073310	Second white 2	0.039
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.078
	CRR073316	Gold flowering 2	0.213
	CRR073317	Gold flowering 3	0.211
	CRR073318	Tawny withering 1	0.477
	CRR073319	Tawny withering 2	0.240
	CRR073320	Tawny withering 3	0.700