Gene detail

Detail information of GWHGAAZE002003

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP09582.1	2.74499E-49	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9C6X9\|FB315_ARATH	6E-16	Probable F-box protein At1g44080
trEMBL	tr\|A0A068UMQ5\|A0A068UMQ5_COFCA	1E-49	Coffea canephora DH200=94 genomic scaffold, scaffold_39 {ECO:0000313\|EMBL:CDP09582.1}
TAIR10	AT1G44080.1	8E-15	F-box family protein with a domain of unknown function (DUF295)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	66991659	66992765	+
GWHAAZE00000001	mRNA	66991659	66992765	+
GWHAAZE00000001	exon	66991659	66992765	+
GWHAAZE00000001	CDS	66991659	66992765	+

Transcript Sequence
>GWHTAAZE002007 ATGGAGAATGCGAAAACAAAGGATTGGTCTCAATTACCGCCCGATCTGCTCCTTTCCATCACAAATCGATTAGGTGCTTTCGAAGATTTTGTTGCATTTTCATCTGTGTGTACCTCTTGGCGATCGGCTCTCTCTAATGAACAAAACTGGTCAAACCGCTGCGTTCCATGGCTCCTTCTTCGCGAACCCCATTTCTCCCGGGTACACGCCAACTACTTGTTCATTCCTACCAGAAACAAGAGGAAGAAGAGATACACTGTCAAAGAGTCGCTCATAGATAACGCAAAGCGCTGTTGGGGATCTTCTTTCGGTTGGATCTTCACTTTGGCTCATGATTATACCACAGCACTCGTCAACCCCTTAACCGGATTGCAAATCACTCTTCCCCACCTTTCGAAATCTATAACAAGATCCCTAGTATTCGTTGATGGTTCTGATAAAAATGACAATGGAAATAACGTCACCGTCATGGTAATTTACGATTATAGAGATCAATACGGGTTAGCCTTTGCTAGGCCAGGTTTTTGTGAATGGATTACTCTACAAGATAACGAAAATGGTGGCCTCGCTGATGTGGCCTGCTACAAGGACAAGATCTTTGGGGTTCGCGCCAACGGGACTCTTGTGATGTGTGAGACCGATAATGTATCGTATCCTATGGTTGCTAATTTTGCTCCTCCACCCGAGCTCATAAATTTCAATAATGTGGGGAGGGTTTATTTGATCGAATCAGCAGGAGATTTACTTATGGCATTGGTAAGGGAGAAATTTAGCGATAAGAAGGAAGCGTTTGAAGTTTATATCTTCGATATGGAGACTAGAAGATGGGGGGAATTGGATGATTTGGGAGACCGAGCATTGTTCTTGGGTGATAATTATTCAATTTCTGTGTTTCCGGCCAATGGGGTTGATTGCACTGCTAATTGCATTTATTTCAGTACGAAGATGGGGTTAGTTGTATTTTATATGAAGGATAGGCGACTAGTAGTGTATTGTTTTACTTATTTTAGAGAGAAATACAGTTGTTCTGTGTCGACGGATTACCTAGCTAGCCTTCTTCATCCGTCAAATTGGGGGCCAGTTTGGGTAAGGCCTAGATTATCATGA

Network for GWHGAAZE002003

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	8	54	7.30E-08
PF03478.19	DUF295	278	315	9.20E-12
PF00612.28	IQ	136	154	3.60E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.424
	SRR3591706	second leaf	1.128
	SRR3591707	mature leaf	1.236
	SRR3591708	Shoot apex	0.810
	SRR3591709	Stem	1.050
	SRR3591710	White floral bud	3.104
	SRR3591711	White flower	1.082
	SRR3591712	Green floral bud	3.331
	SRR3591713	Yellow flower	0.653
SRP173429	SRR8316895	Juvenile bud stage	1.032
	SRR8316896	Juvenile bud stage	1.090
	SRR8316897	Juvenile bud stage	0.230
	SRR8316894	Third green stage	0.365
	SRR8316900	Third green stage	2.330
	SRR8316901	Third green stage	2.310
	SRR8316898	Complete white stage	1.413
	SRR8316899	Complete white stage	3.662
	SRR8316903	Complete white stage	1.907
	SRR8316902	Silver flowering stage	0.908
	SRR8316904	Silver flowering stage	0.575
	SRR8316905	Silver flowering stage	0.539
	SRR8316906	Gold flowering stage	1.665
	SRR8316907	Gold flowering stage	1.625
	SRR8316908	Gold flowering stage	0.898
SRP132670	SRR6706286	Control	2.744
	SRR6706287	Light intensity 50%	2.662
	SRR6706288	Light intensity 20%	2.799
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.751
	CNS0095593	Slightly white alabastrum(diploid) 2	3.073
	CNS0095594	Slightly white alabastrum(diploid) 3	1.381
	CNS0095595	Whole white alabastrum(diploid) 2	2.542
	CNS0095596	Whole white alabastrum(diploid) 3	3.463
	CNS0095597	Whole white alabastrum(diploid) 4	2.630
	CNS0095598	Silvery flower (diploied) 1	0.842
	CNS0095599	Silvery flower (diploied) 2	0.692
	CNS0095600	Silvery flower (diploied) 3	2.510
	CNS0095601	Golden flower (diploid) 1	1.863
	CNS0095602	Golden flower (diploid) 2	2.157
	CNS0095603	Golden flower (diploid) 3	1.976
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.903
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.738
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.357
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.707
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.876
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.755
	CNS0095610	Silvery flower (tetraploid) 1	1.022
	CNS0095611	Silvery flower (tetraploid) 2	1.110
	CNS0095612	Silvery flower (tetraploid) 3	1.071
	CNS0095613	Golden flower (tetraploid) 1	0.123
	CNS0095614	Golden flower (tetraploid) 2	0.672
	CNS0095615	Golden flower (tetraploid) 3	0.221
CRA001975	CRR073297	Stem 1	2.196
	CRR073298	Stem 2	2.297
	CRR073299	Stem 3	2.099
	CRR073300	Leaf 1	2.717
	CRR073301	Leaf 2	2.645
	CRR073302	Leaf 3	2.387
	CRR073303	Juvenile bud 1	3.345
	CRR073304	Juvenile bud 2	2.473
	CRR073305	Juvenile bud 3	3.305
	CRR073306	Third green 1	0.779
	CRR073307	Third green 2	1.422
	CRR073308	Third green 3	0.898
	CRR073309	Second white 1	0.240
	CRR073310	Second white 2	0.530
	CRR073311	Second white 3	0.370
	CRR073312	Silver flowering 1	0.412
	CRR073313	Silver flowering 2	1.682
	CRR073314	Silver flowering 3	0.292
	CRR073315	Gold flowering 1	1.395
	CRR073316	Gold flowering 2	0.451
	CRR073317	Gold flowering 3	1.328
	CRR073318	Tawny withering 1	2.534
	CRR073319	Tawny withering 2	0.751
	CRR073320	Tawny withering 3	1.252