Detail information of GWHGAAZE002005


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009619158.11.61504E-53PREDICTED: F-box protein At3g07870-like [Nicotiana tomentosiformis]
Swissprottr|Q8GXC7|FBK50_ARATH5E-22F-box/kelch-repeat protein At3g06240
trEMBLtr|A0A068V5X4|A0A068V5X4_COFCA1E-50Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313|EMBL:CDP15967.1}
TAIR10AT3G06240.13E-20F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6702341567024458-
GWHAAZE00000001mRNA6702341567024458-
GWHAAZE00000001exon6702341567024458-
GWHAAZE00000001CDS6702341567024458-
Transcript Sequence

Network for GWHGAAZE002005

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07734.14FBA_11482483.00E-08
PF02847.18MA35617.10E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03260EIF4G RNA transport map03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.108
SRR3591706second leaf0.326
SRR3591707mature leaf0.950
SRR3591708Shoot apex0.411
SRR3591709Stem0.425
SRR3591710White floral bud0.769
SRR3591711White flower0.658
SRR3591712Green floral bud0.719
SRR3591713Yellow flower0.366
SRP173429 SRR8316895Juvenile bud stage 0.756
SRR8316896Juvenile bud stage 0.579
SRR8316897Juvenile bud stage 0.046
SRR8316894Third green stage 0.430
SRR8316900Third green stage 0.764
SRR8316901Third green stage 0.888
SRR8316898Complete white stage 0.183
SRR8316899Complete white stage 0.986
SRR8316903Complete white stage 0.398
SRR8316902Silver flowering stage0.061
SRR8316904Silver flowering stage0.172
SRR8316905Silver flowering stage0.127
SRR8316906Gold flowering stage 0.446
SRR8316907Gold flowering stage 0.202
SRR8316908Gold flowering stage 0.324
SRP132670SRR6706286Control0.510
SRR6706287Light intensity 50%0.450
SRR6706288Light intensity 20%0.577
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.752
CNS0095593Slightly white alabastrum(diploid) 20.461
CNS0095594Slightly white alabastrum(diploid) 30.821
CNS0095595Whole white alabastrum(diploid) 20.808
CNS0095596Whole white alabastrum(diploid) 30.844
CNS0095597Whole white alabastrum(diploid) 41.191
CNS0095598Silvery flower (diploied) 10.592
CNS0095599Silvery flower (diploied) 20.122
CNS0095600Silvery flower (diploied) 30.859
CNS0095601Golden flower (diploid) 11.086
CNS0095602Golden flower (diploid) 20.819
CNS0095603Golden flower (diploid) 30.916
CNS0095604Slightly white alabastrum(tetraploid) 10.259
CNS0095605Slightly white alabastrum(tetraploid) 20.086
CNS0095606Slightly white alabastrum(tetraploid) 30.451
CNS0095607Whole white alabastrum(tetraploid) 10.276
CNS0095608Whole white alabastrum(tetraploid) 20.110
CNS0095609Whole white alabastrum(tetraploid) 30.175
CNS0095610Silvery flower (tetraploid) 10.187
CNS0095611Silvery flower (tetraploid) 20.345
CNS0095612Silvery flower (tetraploid) 30.299
CNS0095613Golden flower (tetraploid) 10.140
CNS0095614Golden flower (tetraploid) 20.089
CNS0095615Golden flower (tetraploid) 30.261
CRA001975CRR073297Stem 10.727
CRR073298Stem 20.608
CRR073299Stem 31.393
CRR073300Leaf 10.733
CRR073301Leaf 20.438
CRR073302Leaf 30.655
CRR073303Juvenile bud 11.122
CRR073304Juvenile bud 20.689
CRR073305Juvenile bud 30.203
CRR073306Third green 10.240
CRR073307Third green 20.000
CRR073308Third green 30.050
CRR073309Second white 10.004
CRR073310Second white 20.318
CRR073311Second white 30.035
CRR073312Silver flowering 10.513
CRR073313Silver flowering 20.235
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.776
CRR073316Gold flowering 21.492
CRR073317Gold flowering 31.756
CRR073318Tawny withering 11.175
CRR073319Tawny withering 21.584
CRR073320Tawny withering 30.316