Gene detail

Detail information of GWHGAAZE002011

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15967.1	1.52465E-24	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	0.00000006	F-box protein CPR30
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	6E-25	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT4G12560.2	0.0000004	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67108755	67109234	+
GWHAAZE00000001	mRNA	67108755	67109234	+
GWHAAZE00000001	exon	67108755	67109234	+
GWHAAZE00000001	CDS	67108755	67109234	+

Transcript Sequence
>GWHTAAZE002015 ATGGCGTCCGTCCATTGGATAGGATATGATCGAAACAATGCTGATTATAGTTTGAGAGTGCGTATTGTGTCATTTGACTTGAAAAATGAATCGTTTGGTGCTGTGATGGTGCCAAATACGTTAAAGAGCGAGTGGTGCATGTGGGTTGCTACATCTGGAGAATCTCTTTCTTTAATACATCAAAAAGATAATTGTTGTTCTGTATGGATGATGAAGGATTATGGCATAGCAGACTCTTGGACAAAGCTATTCAATATAGATCGAGATCGAGAACAACCAAGTTACCAGAGATCAGTTTGGTTTAGACAGAATGGTGGTATCTTATTGGCGAAGCACTTTGGACGTGCTAATTCTGATGAAGGGGATTTGAGTTCTTATGATCCTGAAAGTAAGGAAATCAAAAGTGTTGGTATACATGGAAAGACAAACTCATTTTATGTAGATACTTACATGGAGAGCCTTGTCCTAATTCAAAATTAA

Network for GWHGAAZE002011

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07734.14	FBA_1	4	92	1.20E-07
PF00612.28	IQ	105	120	0.0057
PF00612.28	IQ	124	142	0.0029

Protein Sequence

>GWHPAAZE013927
MLLQTKGSSDKRGWSFRKRSPKHRVLNNTAISDVLPSGNNKESQESIAVSYQVEANSAIPEKPSEMKWKDETPQSTTSVNSKSSEIIDATEDAKKFDKDHNESVIIVIQAAIRGFLAQRSLLKHKNVVKLQAAVRGHLVRSHAVGTLRCVQAIVKMQALVRARRARLSAERSRIQEKLDEKHQEDNYSSKLQGKQNSGTKPDLTNTSIEKLLSNSFARQLMESTTKTKPIKIKCDPSKSDSAWKWLERWVSVSPTGVEQSVKPELSAKLDEPEKDKCPENQLDNEIPSTDYCDSRDLFSTTEEATMPSLDSSMGEAAVPSESEVNSLTQKSESFSIQPHSEITAMSNPRENSDFPPNEASQSDLIPQVEFNSLSAKPELEMEQPNRSMKRNAPEQPETEERKLLFGSRKACNPAFIAAQSKFEELTSTMNPAKSVNLSNQALGVESCAADVSSATDNAIKTKEIDPAENSVPYNSRIQRIGSEIGTELSVSSTLDSPVRSEPLPVEYKQQSDVSEEETSDPKSNKKVDIEAKVNPTIPNIDLSCPISDQPEKFDNGNAADGEPFNSILVGNSSHVDQKLEDNVSAQTEMGPETVHQVCKSSTPEAFPRSHMTTLPESQVLIPAFAPTIMDKRCMAFVSRADISASLSGCVGWYDRGSPVISKAAKVRLFLSEDSPSLVGLGGAQDHLQAKASWPSSSLYSSSAGGGGASSDDNLPPGFEGTPPASLLKNKLSQIPLIKWTCPPGFVLDFKWEVVAGDESKEVEIQNQREMRVLEAVYPRPSAIPPNPSLVTGIEDYPHNDEHTPLIPIIPVEEEDAAADTSVADNLPQNTLPMSSQLSQISTPPASQCGASSADIIPSTGMALALEPELLNAAYAALSTVITSNDQRNMIDSDLLVKILSDPSFIENLVTTQQAVPNSRSQGVTLSDPPPVHINRNQVIPPMPPLAGPSGPRPFYPPPPSRVGPSPPPMPPPVPKDINYYKSLIQQHGEERNDTTTQPQFGGRHNHQLGVNPEASVSNPPRPRDLKPKIMKPCIYFNSSRGCRHGANCAYQHDVSAQQRVSGIQETNVESEFQYVCGFEDHEAVNLKDKIITDVISGGS

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.146
	SRR3591706	second leaf	5.948
	SRR3591707	mature leaf	5.194
	SRR3591708	Shoot apex	4.572
	SRR3591709	Stem	4.966
	SRR3591710	White floral bud	5.402
	SRR3591711	White flower	8.255
	SRR3591712	Green floral bud	4.468
	SRR3591713	Yellow flower	4.231
SRP173429	SRR8316895	Juvenile bud stage	2.528
	SRR8316896	Juvenile bud stage	2.221
	SRR8316897	Juvenile bud stage	0.751
	SRR8316894	Third green stage	1.828
	SRR8316900	Third green stage	6.729
	SRR8316901	Third green stage	4.602
	SRR8316898	Complete white stage	3.339
	SRR8316899	Complete white stage	5.483
	SRR8316903	Complete white stage	3.829
	SRR8316902	Silver flowering stage	2.257
	SRR8316904	Silver flowering stage	6.947
	SRR8316905	Silver flowering stage	2.392
	SRR8316906	Gold flowering stage	8.660
	SRR8316907	Gold flowering stage	9.718
	SRR8316908	Gold flowering stage	8.073
SRP132670	SRR6706286	Control	1.033
	SRR6706287	Light intensity 50%	1.680
	SRR6706288	Light intensity 20%	1.700
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.143
	CNS0095593	Slightly white alabastrum(diploid) 2	2.645
	CNS0095594	Slightly white alabastrum(diploid) 3	2.696
	CNS0095595	Whole white alabastrum(diploid) 2	3.559
	CNS0095596	Whole white alabastrum(diploid) 3	3.092
	CNS0095597	Whole white alabastrum(diploid) 4	3.893
	CNS0095598	Silvery flower (diploied) 1	9.718
	CNS0095599	Silvery flower (diploied) 2	6.765
	CNS0095600	Silvery flower (diploied) 3	7.784
	CNS0095601	Golden flower (diploid) 1	7.596
	CNS0095602	Golden flower (diploid) 2	8.590
	CNS0095603	Golden flower (diploid) 3	7.577
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.968
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.958
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.148
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.625
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.576
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.987
	CNS0095610	Silvery flower (tetraploid) 1	6.904
	CNS0095611	Silvery flower (tetraploid) 2	7.596
	CNS0095612	Silvery flower (tetraploid) 3	5.821
	CNS0095613	Golden flower (tetraploid) 1	4.692
	CNS0095614	Golden flower (tetraploid) 2	6.867
	CNS0095615	Golden flower (tetraploid) 3	8.488
CRA001975	CRR073297	Stem 1	2.337
	CRR073298	Stem 2	3.087
	CRR073299	Stem 3	1.808
	CRR073300	Leaf 1	2.595
	CRR073301	Leaf 2	2.900
	CRR073302	Leaf 3	1.764
	CRR073303	Juvenile bud 1	3.687
	CRR073304	Juvenile bud 2	2.455
	CRR073305	Juvenile bud 3	1.674
	CRR073306	Third green 1	1.876
	CRR073307	Third green 2	1.453
	CRR073308	Third green 3	1.635
	CRR073309	Second white 1	1.716
	CRR073310	Second white 2	3.035
	CRR073311	Second white 3	4.255
	CRR073312	Silver flowering 1	2.732
	CRR073313	Silver flowering 2	2.260
	CRR073314	Silver flowering 3	1.326
	CRR073315	Gold flowering 1	4.150
	CRR073316	Gold flowering 2	3.367
	CRR073317	Gold flowering 3	2.319
	CRR073318	Tawny withering 1	2.161
	CRR073319	Tawny withering 2	3.429
	CRR073320	Tawny withering 3	1.445