Gene detail

Detail information of GWHGAAZE002016

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009601545.1	1.8518E-116	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	1E-22	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A068V613\|A0A068V613_COFCA	4E-84	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15969.1}
TAIR10	AT3G06240.1	6E-21	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67177140	67178409	+
GWHAAZE00000001	mRNA	67177140	67178409	+
GWHAAZE00000001	exon	67177140	67177765	+
GWHAAZE00000001	exon	67177863	67178409	+
GWHAAZE00000001	CDS	67177140	67177765	+
GWHAAZE00000001	CDS	67177863	67178409	+

Transcript Sequence
>GWHTAAZE002020 ATGTCCGATTATATACCTCCTACAGTTATCACGAGCATTCTCTGCAGACTACCGGTAAAAACCCTAGTTCGATTCAGGTGCGTATGCAAATCATGGTGCTCCCTCATTTCAAGCCCTAATTTCATCAACAAACACCTCACTCTCGCCCTCAAAACCCCTCCTCACCTCCTCTTGAAATACCTCTCACTAAGCCCCAAAAGAGAACATTACTCCCTTCGTTTAACCAACGAATCCATCGACGAATTCACCCAACTACACTGCCCTTTTAAGACCGCTTCAGGTAATTTCTTCCGCGTAATCGGCTCTTGCAACGGCTTAATTTGTCTCTCTGATGAATGTTTTGGATTTACTTACACAATCATCATTTGGAACCCTGCAATTAAAAAGTATGTGTCCCTTCCTATGCCTAGGGTTTGCTTTGATTCCTATGGGCCGTACACGTTTTCTCTAGGGTTTGGTTTTCACCCCGATACCATGGATTATAAGGTTGTTAGGATTGCGTATGTTTTTGACGGTGATCACAAGTATATGCTTCCTCCAGAGGTTGAGGTTTATGCTTTTAGTACGGGGGAGTGGAGAACTGTGAGTGCTAACCATGTTACTTGTAAAATTGTTGAGTTCTTTTGTGAGCTGTTTAGACAGATAGAATTACCAAATCAGCTAGTTCATGATTACCCGATGGATTTGGCTGTTTCGGCTTCTGGGGATACTATTGTTGTGTTTTTGTATCAAGGTCGAATGACGGGTCAGTTCTGTGATGGTTGTGCGGTGTGGGTGATGGGAGAATATGGTGATGTGGGGTCTTGGAGTAAGCGCTTTTTCGTTGAGTTGGATGGAGGGATATCGAATGTGCTGGGGTTTGGGAATAGTGGGGAATTGCTGCTTGAGAAGTGTATTGGAAGGCTGGTTTCATATCAGCCCGAGAGCAATGAGGTTAAGAATCTTGAAATTCGTGGTTTTAAGGACTCTTTCTATGTGGGTAATTATGTCGAGAGCCTTGTTCTTATGGATGTGGAAAAGGGAGTTTTGGGGGACCAGGTCAAGTTTGTTGACGGAGCCGATTCAGAAGATGAACCTGAGTTGACTGAAATGGAGCAGGTGCTTGAAGAGCTTCATATCTTCAGGAGGTGGGTTGCTCATAGGATTTTCGCAAAAGTTGCGCTCGAATATTAG

Network for GWHGAAZE002016

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	6	44	1.80E-08
PF00817.21	IMS	17	221	3.00E-48
PF11799.9	IMS_C	304	439	2.50E-15

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K03509	POLH	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0005515	molecular_function	protein binding
GO:0003684	molecular_function	damaged DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.427
	SRR3591706	second leaf	4.138
	SRR3591707	mature leaf	3.103
	SRR3591708	Shoot apex	3.540
	SRR3591709	Stem	2.082
	SRR3591710	White floral bud	6.385
	SRR3591711	White flower	7.494
	SRR3591712	Green floral bud	6.447
	SRR3591713	Yellow flower	5.074
SRP173429	SRR8316895	Juvenile bud stage	3.662
	SRR8316896	Juvenile bud stage	3.925
	SRR8316897	Juvenile bud stage	1.302
	SRR8316894	Third green stage	2.097
	SRR8316900	Third green stage	4.919
	SRR8316901	Third green stage	4.173
	SRR8316898	Complete white stage	1.329
	SRR8316899	Complete white stage	6.910
	SRR8316903	Complete white stage	2.108
	SRR8316902	Silver flowering stage	1.165
	SRR8316904	Silver flowering stage	2.604
	SRR8316905	Silver flowering stage	1.248
	SRR8316906	Gold flowering stage	3.499
	SRR8316907	Gold flowering stage	1.501
	SRR8316908	Gold flowering stage	1.567
SRP132670	SRR6706286	Control	6.313
	SRR6706287	Light intensity 50%	6.608
	SRR6706288	Light intensity 20%	6.836
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.717
	CNS0095593	Slightly white alabastrum(diploid) 2	2.712
	CNS0095594	Slightly white alabastrum(diploid) 3	3.363
	CNS0095595	Whole white alabastrum(diploid) 2	2.640
	CNS0095596	Whole white alabastrum(diploid) 3	2.895
	CNS0095597	Whole white alabastrum(diploid) 4	3.336
	CNS0095598	Silvery flower (diploied) 1	6.613
	CNS0095599	Silvery flower (diploied) 2	3.739
	CNS0095600	Silvery flower (diploied) 3	4.661
	CNS0095601	Golden flower (diploid) 1	3.700
	CNS0095602	Golden flower (diploid) 2	4.636
	CNS0095603	Golden flower (diploid) 3	6.294
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.014
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.292
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.358
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.785
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.699
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.036
	CNS0095610	Silvery flower (tetraploid) 1	1.922
	CNS0095611	Silvery flower (tetraploid) 2	2.004
	CNS0095612	Silvery flower (tetraploid) 3	0.942
	CNS0095613	Golden flower (tetraploid) 1	0.709
	CNS0095614	Golden flower (tetraploid) 2	1.607
	CNS0095615	Golden flower (tetraploid) 3	1.197
CRA001975	CRR073297	Stem 1	5.485
	CRR073298	Stem 2	6.142
	CRR073299	Stem 3	6.312
	CRR073300	Leaf 1	4.368
	CRR073301	Leaf 2	3.988
	CRR073302	Leaf 3	1.900
	CRR073303	Juvenile bud 1	3.503
	CRR073304	Juvenile bud 2	2.009
	CRR073305	Juvenile bud 3	3.254
	CRR073306	Third green 1	1.790
	CRR073307	Third green 2	2.253
	CRR073308	Third green 3	2.574
	CRR073309	Second white 1	2.286
	CRR073310	Second white 2	2.004
	CRR073311	Second white 3	2.797
	CRR073312	Silver flowering 1	3.136
	CRR073313	Silver flowering 2	3.520
	CRR073314	Silver flowering 3	2.480
	CRR073315	Gold flowering 1	1.572
	CRR073316	Gold flowering 2	1.552
	CRR073317	Gold flowering 3	0.801
	CRR073318	Tawny withering 1	1.929
	CRR073319	Tawny withering 2	1.811
	CRR073320	Tawny withering 3	1.656