Gene detail

Detail information of GWHGAAZE002020

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15967.1	3.7805E-115	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LIR8\|FBK67_ARATH	3E-31	F-box/kelch-repeat protein At3g23880
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	1E-115	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT3G23880.1	3E-28	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67265923	67267182	+
GWHAAZE00000001	mRNA	67265923	67267182	+
GWHAAZE00000001	exon	67265923	67266567	+
GWHAAZE00000001	exon	67266700	67267182	+
GWHAAZE00000001	CDS	67265923	67266567	+
GWHAAZE00000001	CDS	67266700	67267182	+

Transcript Sequence
>GWHTAAZE002024 ATGTCAGATTACATTCCCCAAGAGTTAGTCCTTCAAATCCTCTCATGGTTACCTCCAAAGTCCCTGCTCCGCTTCAGGTGCGTTTGTAAATCTTGGTGTTCCCTTATTACAAGCCCTAATTTCATCCATATTCACACACGCAACCTCAGTGTTCCCAACTGCATCACCAACACTCGCAAACTCATCAGGCACTGCACTATATCTCCTCTCAGCAAAGACGTCTATTCGGTACATTTCGATGACCGATCGTTCGACCTTGATTATACTGTCGAAATCGATTTCCCCTTTAATAACAAACGCTATTATGAAATTGTGGGTTCTTGTAATGGTCTGATTTGCCTCTCGGATGATGTACGTGGCTACACAAATACTATTATTCTATGGAACCCTGCAATCAGGAGAAAATTGACCCTTCCCCTGCCCCAGGGTGTACTAAAGAACTTGGGATCTTATATGTTTGTTCTTGGATTTGGGTTTGACTGTGAGGCTGATGATTACAAGATTCTCAGACTTTCGTATAGGAAATGCGGTGATATGATTATAGTGCCCCCATTAGTTGAGGTTTATACTGTTAAAACTGGGGCATGGAGGACCATCAGTGCTCCTGCTCCTCAATTTATTATTGCCGGGTACTACGGGCGCCAGGCTTATGTTAATGGGGCTGCACATTGGGTCGCGTATCCTCCGAACTATAGATGCACATGCAGTTTGATTTTGTCGTTTGATATGTGTAATGAGGTCTTTCGTGAGATTATGTTGCCCAGATGTTTAGTGGGCGAATCTGCTTGGTACATGGAGGTGGTTGTGATACAAGATTCATTAGCTGTTGTAGAATATGACAAATCCCTTAACACGCGTTCGGTTTGGGTGATGAAAGAGTATGGTGTGGTCGAGTCCTGGACAAAGCTATATAATATTGATACAGAGGTTGGTTTGGGGATAATGCTTGGTGTCCGGAGGAATGGTGAAGTGTTATTGACAACAAGAAATGAAGAGCTGGTAGATTATAATGTGCAGACTGGAGAAAGCGTGAACCTTATCACCAATGGGATTAAAAATAACTTTTTTGTGGATACTTATAAGGAGAGCTTCGCTTTACTCTTAGAAGGAGAAAAAACTGAAATCTAG

Network for GWHGAAZE002020

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	6	41	1.40E-10
PF07734.14	FBA_1	217	326	3.30E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K00472	P4HA	Metabolic pathways	map01100
K00472	P4HA	Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.543
	SRR3591706	second leaf	0.195
	SRR3591707	mature leaf	0.408
	SRR3591708	Shoot apex	1.526
	SRR3591709	Stem	1.188
	SRR3591710	White floral bud	0.788
	SRR3591711	White flower	0.811
	SRR3591712	Green floral bud	1.001
	SRR3591713	Yellow flower	0.028
SRP173429	SRR8316895	Juvenile bud stage	0.527
	SRR8316896	Juvenile bud stage	0.702
	SRR8316897	Juvenile bud stage	0.236
	SRR8316894	Third green stage	0.187
	SRR8316900	Third green stage	0.584
	SRR8316901	Third green stage	0.599
	SRR8316898	Complete white stage	0.128
	SRR8316899	Complete white stage	1.057
	SRR8316903	Complete white stage	0.193
	SRR8316902	Silver flowering stage	0.132
	SRR8316904	Silver flowering stage	0.173
	SRR8316905	Silver flowering stage	0.088
	SRR8316906	Gold flowering stage	0.234
	SRR8316907	Gold flowering stage	0.244
	SRR8316908	Gold flowering stage	0.313
SRP132670	SRR6706286	Control	0.500
	SRR6706287	Light intensity 50%	0.743
	SRR6706288	Light intensity 20%	0.896
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.951
	CNS0095593	Slightly white alabastrum(diploid) 2	1.626
	CNS0095594	Slightly white alabastrum(diploid) 3	0.403
	CNS0095595	Whole white alabastrum(diploid) 2	0.921
	CNS0095596	Whole white alabastrum(diploid) 3	0.472
	CNS0095597	Whole white alabastrum(diploid) 4	0.136
	CNS0095598	Silvery flower (diploied) 1	0.500
	CNS0095599	Silvery flower (diploied) 2	1.264
	CNS0095600	Silvery flower (diploied) 3	0.538
	CNS0095601	Golden flower (diploid) 1	1.188
	CNS0095602	Golden flower (diploid) 2	0.672
	CNS0095603	Golden flower (diploid) 3	0.648
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.147
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.739
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.214
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.085
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.188
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.381
	CNS0095610	Silvery flower (tetraploid) 1	0.390
	CNS0095611	Silvery flower (tetraploid) 2	0.522
	CNS0095612	Silvery flower (tetraploid) 3	2.119
	CNS0095613	Golden flower (tetraploid) 1	0.275
	CNS0095614	Golden flower (tetraploid) 2	0.233
	CNS0095615	Golden flower (tetraploid) 3	0.075
CRA001975	CRR073297	Stem 1	1.136
	CRR073298	Stem 2	1.235
	CRR073299	Stem 3	0.791
	CRR073300	Leaf 1	0.636
	CRR073301	Leaf 2	1.041
	CRR073302	Leaf 3	0.865
	CRR073303	Juvenile bud 1	0.725
	CRR073304	Juvenile bud 2	0.119
	CRR073305	Juvenile bud 3	0.780
	CRR073306	Third green 1	0.208
	CRR073307	Third green 2	0.089
	CRR073308	Third green 3	0.211
	CRR073309	Second white 1	0.474
	CRR073310	Second white 2	0.010
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.675
	CRR073316	Gold flowering 2	0.552
	CRR073317	Gold flowering 3	0.268
	CRR073318	Tawny withering 1	0.372
	CRR073319	Tawny withering 2	0.124
	CRR073320	Tawny withering 3	0.290