Gene detail

Detail information of GWHGAAZE002021

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010274421.1	2.58388E-14	PREDICTED: F-box protein SKIP23-like [Nelumbo nucifera]
Swissprot	tr\|Q9C6X9\|FB315_ARATH	0.000002	Probable F-box protein At1g44080
trEMBL	tr\|A0A059AVW0\|A0A059AVW0_EUCGR	5E-11	Uncharacterized protein {ECO:0000313\|EMBL:KCW57791.1}
TAIR10	AT1G44080.1	0.00001	F-box family protein with a domain of unknown function (DUF295)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67286042	67286521	+
GWHAAZE00000001	mRNA	67286042	67286521	+
GWHAAZE00000001	exon	67286042	67286521	+
GWHAAZE00000001	CDS	67286042	67286521	+

Transcript Sequence
>GWHTAAZE002025 ATGTGTGAGACCGATAATGTATCGTATCCTATGGTTGCTAATTTTGCTCCTCCACCCGAGCTCATAAATTTCAATAATGTGGGGAGGGTTTATTTGATCGAATCAGCAGGAGATTTACTTATGGCATTGGTAAGGGAGAAATTTAGCGATAAGAAGGAAGCGTTTGAAGTTTATATCTTCGATATGGAGACTAGAAGATGGGGGGAATTGGATGATTTGGGAGACCGAGCATTGTTCTTGGGTGATAATTATTCAATTTCTGTGTTTCCGGCCAATGGGGTTGATTGCACCGCTAATTGCATTTATTTCAGTACGAAGATGGGGTTAGTTGTATTTTATATGAAGGATAGGCGACTAGTAGTGTATTGTTTTACTTATTTTAGAGAGAAATACAGTTGTTCTGTGTCGACGGATTACCTAGCTAGCCTTCTTCATCCGTCAAATTGGGGGCCAGTTTGGGTAAGGCCTAGATTATCATGA

Network for GWHGAAZE002021

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03478.19	DUF295	69	107	2.90E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01047	PLA2G, SPLA2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Arachidonic acid metabolism	map00590
		Linoleic acid metabolism	map00591
		alpha-Linolenic acid metabolism	map00592
		Ras signaling pathway	map04014
		Vascular smooth muscle contraction	map04270
		Pancreatic secretion	map04972
		Fat digestion and absorption	map04975

Gene Ontology

GO term	Ontology	Name
GO:0006644	biological_process	phospholipid metabolic process
GO:0050482	biological_process	arachidonic acid secretion
GO:0004623	molecular_function	phospholipase A2 activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.483
	SRR3591706	second leaf	0.751
	SRR3591707	mature leaf	1.181
	SRR3591708	Shoot apex	1.140
	SRR3591709	Stem	1.388
	SRR3591710	White floral bud	3.627
	SRR3591711	White flower	1.392
	SRR3591712	Green floral bud	4.555
	SRR3591713	Yellow flower	1.287
SRP173429	SRR8316895	Juvenile bud stage	0.943
	SRR8316896	Juvenile bud stage	1.189
	SRR8316897	Juvenile bud stage	0.496
	SRR8316894	Third green stage	0.208
	SRR8316900	Third green stage	3.344
	SRR8316901	Third green stage	2.496
	SRR8316898	Complete white stage	1.602
	SRR8316899	Complete white stage	3.240
	SRR8316903	Complete white stage	1.794
	SRR8316902	Silver flowering stage	0.509
	SRR8316904	Silver flowering stage	0.865
	SRR8316905	Silver flowering stage	0.362
	SRR8316906	Gold flowering stage	1.602
	SRR8316907	Gold flowering stage	0.713
	SRR8316908	Gold flowering stage	0.976
SRP132670	SRR6706286	Control	2.851
	SRR6706287	Light intensity 50%	2.922
	SRR6706288	Light intensity 20%	2.928
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.426
	CNS0095593	Slightly white alabastrum(diploid) 2	4.108
	CNS0095594	Slightly white alabastrum(diploid) 3	2.366
	CNS0095595	Whole white alabastrum(diploid) 2	6.263
	CNS0095596	Whole white alabastrum(diploid) 3	6.302
	CNS0095597	Whole white alabastrum(diploid) 4	3.487
	CNS0095598	Silvery flower (diploied) 1	1.973
	CNS0095599	Silvery flower (diploied) 2	0.999
	CNS0095600	Silvery flower (diploied) 3	2.655
	CNS0095601	Golden flower (diploid) 1	1.659
	CNS0095602	Golden flower (diploid) 2	1.566
	CNS0095603	Golden flower (diploid) 3	1.412
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.753
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.019
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.149
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.615
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.754
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.319
	CNS0095610	Silvery flower (tetraploid) 1	2.973
	CNS0095611	Silvery flower (tetraploid) 2	3.629
	CNS0095612	Silvery flower (tetraploid) 3	3.196
	CNS0095613	Golden flower (tetraploid) 1	0.830
	CNS0095614	Golden flower (tetraploid) 2	1.947
	CNS0095615	Golden flower (tetraploid) 3	0.700
CRA001975	CRR073297	Stem 1	1.160
	CRR073298	Stem 2	1.592
	CRR073299	Stem 3	1.663
	CRR073300	Leaf 1	2.120
	CRR073301	Leaf 2	3.781
	CRR073302	Leaf 3	2.965
	CRR073303	Juvenile bud 1	2.826
	CRR073304	Juvenile bud 2	1.710
	CRR073305	Juvenile bud 3	1.102
	CRR073306	Third green 1	0.230
	CRR073307	Third green 2	0.563
	CRR073308	Third green 3	0.587
	CRR073309	Second white 1	0.035
	CRR073310	Second white 2	0.560
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.021
	CRR073313	Silver flowering 2	0.120
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.681
	CRR073316	Gold flowering 2	1.518
	CRR073317	Gold flowering 3	0.501
	CRR073318	Tawny withering 1	1.466
	CRR073319	Tawny withering 2	0.786
	CRR073320	Tawny withering 3	0.640