Gene detail

Detail information of GWHGAAZE002027

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082970.1	6.65899E-82	PREDICTED: F-box protein At3g07870-like [Sesamum indicum]
Swissprot	tr\|Q9SFC7\|FB135_ARATH	5E-27	F-box protein At3g07870
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	4E-82	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT3G07870.1	2E-22	F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67393332	67394501	+
GWHAAZE00000001	mRNA	67393332	67394501	+
GWHAAZE00000001	exon	67393332	67394501	+
GWHAAZE00000001	CDS	67393332	67394501	+

Transcript Sequence
>GWHTAAZE002031 ATGTCTGACAATATTCCCCCAGAAGTATTGACCGATATCTTAGCAAGGTTGCCAATCAAGTCTCTGTTGAGATGCACTAGTGTTTCCAAATCATGGTACTCTTTCATCACTTCTCCTTCTTTCGTTACCTCTCATATCAATCTATCAGTTTCCAACAACAATCAGACTAGTCGCCTGTTAGTTAGGGTTTGCACTGATGATGATGAGAGGACGGAGGATAACGAATTTAACTCACACTCCTCTACAACTAAGAGAGAGCGCTTCTCTGTACACATTGATGACCAGGCATTTAACGAGTGTGCCGAACTAAATTTTCCATTTACTAGCGGACATGGGTTTTTCCGAATAATTGGGAGTTTAAATGGATTGCTTTGTTTGTCTGATGACCAAGGGGTTTACAAGGATATCATCATCTTATGGAACCCCTCTCTTAAAAAAACTCTGCCTTTGCCAAAGCCCGGTGTTTTATACGAGTCACATGGTCCTTATCAGAGTTCTATGGGATTTGGCTACATACCTTCAATTGATGACTACAAGGTTGTGAGGGTTGTGTATCTACAAAACGAACATGGCTACAGCAAAGTTCCGCCGCTAGTAGAGATTTTTGAGCTTAGCACTGGCTCTTGGCGAGATGTTAATGCTGGGAATTTTGAGTCCATTATCAAGGAACGTGCTCCGCAGGCTTTTTTGAATGGCGTCGTCCATTGGATAGGATATGATCGAAACAATGCTGATTATAGTTTGAGAGTGCGTATTGTGTCATTTGACTTGAAAAATGAATCGTTTGGTGCTGTGATGGTGCCAAATACGTTAAAGAGCGAGTGGTGCATGTGGGTTGCTACATCTGGAGAATCTCTTTCTTTAATACATCAAAAAGATAATTGTTGTTCTGTATGGATGATGAAGGATTATGGCATAGCAGACTCTTGGACAAAGCTATTCAATATAGATCGAGATCGAGAACAACCAAGTTACCAGAGATCAGTTTGGTTTAGACAGAATGGTGGTATCTTATTGGCGAAGCACTTTGGACGTGCTAATTCTGATGAAGGGGATTTGAGTTCTTATGATCCTGAAAGTAAGGAAATCAAAAGTGTTGGTATACATGGAAAGACAAACTCATTTTATGTAGATACTTACATGGAGAGCCTTGTCCTAATTCAAAATTGA

Network for GWHGAAZE002027

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	4	46	1.90E-10
PF07734.14	FBA_1	229	321	1.00E-08
PF14308.7	DnaJ-X	1	142	1.30E-33

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.182
	SRR3591706	second leaf	5.380
	SRR3591707	mature leaf	5.586
	SRR3591708	Shoot apex	5.920
	SRR3591709	Stem	4.474
	SRR3591710	White floral bud	6.218
	SRR3591711	White flower	6.570
	SRR3591712	Green floral bud	4.546
	SRR3591713	Yellow flower	5.026
SRP173429	SRR8316895	Juvenile bud stage	2.981
	SRR8316896	Juvenile bud stage	3.258
	SRR8316897	Juvenile bud stage	1.041
	SRR8316894	Third green stage	1.754
	SRR8316900	Third green stage	7.273
	SRR8316901	Third green stage	4.983
	SRR8316898	Complete white stage	5.348
	SRR8316899	Complete white stage	8.507
	SRR8316903	Complete white stage	5.572
	SRR8316902	Silver flowering stage	3.325
	SRR8316904	Silver flowering stage	6.789
	SRR8316905	Silver flowering stage	2.993
	SRR8316906	Gold flowering stage	8.578
	SRR8316907	Gold flowering stage	7.841
	SRR8316908	Gold flowering stage	8.170
SRP132670	SRR6706286	Control	3.520
	SRR6706287	Light intensity 50%	3.895
	SRR6706288	Light intensity 20%	3.893
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.067
	CNS0095593	Slightly white alabastrum(diploid) 2	3.401
	CNS0095594	Slightly white alabastrum(diploid) 3	3.686
	CNS0095595	Whole white alabastrum(diploid) 2	3.612
	CNS0095596	Whole white alabastrum(diploid) 3	3.508
	CNS0095597	Whole white alabastrum(diploid) 4	3.121
	CNS0095598	Silvery flower (diploied) 1	6.890
	CNS0095599	Silvery flower (diploied) 2	6.374
	CNS0095600	Silvery flower (diploied) 3	12.023
	CNS0095601	Golden flower (diploid) 1	7.326
	CNS0095602	Golden flower (diploid) 2	12.018
	CNS0095603	Golden flower (diploid) 3	10.978
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.927
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.822
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.634
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.064
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.228
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.484
	CNS0095610	Silvery flower (tetraploid) 1	9.783
	CNS0095611	Silvery flower (tetraploid) 2	13.327
	CNS0095612	Silvery flower (tetraploid) 3	10.062
	CNS0095613	Golden flower (tetraploid) 1	6.236
	CNS0095614	Golden flower (tetraploid) 2	10.131
	CNS0095615	Golden flower (tetraploid) 3	14.789
CRA001975	CRR073297	Stem 1	4.012
	CRR073298	Stem 2	4.351
	CRR073299	Stem 3	3.684
	CRR073300	Leaf 1	4.624
	CRR073301	Leaf 2	3.922
	CRR073302	Leaf 3	5.547
	CRR073303	Juvenile bud 1	5.708
	CRR073304	Juvenile bud 2	5.322
	CRR073305	Juvenile bud 3	5.497
	CRR073306	Third green 1	3.514
	CRR073307	Third green 2	3.035
	CRR073308	Third green 3	3.928
	CRR073309	Second white 1	3.384
	CRR073310	Second white 2	5.620
	CRR073311	Second white 3	3.846
	CRR073312	Silver flowering 1	3.625
	CRR073313	Silver flowering 2	4.176
	CRR073314	Silver flowering 3	4.475
	CRR073315	Gold flowering 1	4.238
	CRR073316	Gold flowering 2	5.286
	CRR073317	Gold flowering 3	4.148
	CRR073318	Tawny withering 1	3.181
	CRR073319	Tawny withering 2	4.264
	CRR073320	Tawny withering 3	2.315