Gene detail

Detail information of GWHGAAZE002029

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009601545.1	4.45268E-42	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	1E-16	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|B9GFB6\|B9GFB6_POPTR	8E-42	Uncharacterized protein {ECO:0000313\|EMBL:EEE83223.1}
TAIR10	AT3G06240.1	3E-15	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67432765	67433634	+
GWHAAZE00000001	mRNA	67432765	67433634	+
GWHAAZE00000001	exon	67432765	67433634	+
GWHAAZE00000001	CDS	67432765	67433634	+

Transcript Sequence
>GWHTAAZE002033 ATGATACTATGGAACCCTTGCATTCGGAAATATGTGACCCTTCCAACGCCAATTGTTACCTACGAATCACATGGCCTTTTTCAGCAGTCTATAGGATTTGGATATAACTCTGCATCAAATGACTACAGGGTTGTGAGGGTCGTTTATCTCCGACCAGATGGTTTTACGGTACTTCCAGGGGCAAAGGTAGAGCTTTATGAGCTTAGCACTGGCTGCAGGCGCAATATTAATGCTGGGGACTTGAGCTATATTGTCAATGAGCGTGATCCGCAAGCTTTATTCCATGGTGTGGTCCATTGGACTGGTGTTGAAGGAGATGGTTTTCATAATTTGATTGTGTCATTCAACATGGAAACTGAGGGGTTTGGTACTATGATGGTGCCACCTAGTTTACAGCAGGTCCAGCGGGAGTACATCCTGCGTGTAGCAGTATTTAGAAATTCACTTTCTTTGATGCATCTTAAAGTTTCTTGGGGTGATCGTAATTGTTGCATGTGGGTGATGAATGAGTATGGCATAGCCAAATCTTGGAGTAAACAATTCACGATTGATCTAAATATGGGGTTTTTGAACGGACCATTTGGCTTTAGAGAGAATGGTGATGTTTTAGTTGCAACACTACATGAGAATGGCCTTGGAGATTTAGGTTCTTATGATCCCAAAAGTAAACAAATTAAGAATCTTGGAATATGCGGACGTGCATATGCTATTCCCAAAGATACTTATGCGGAGAGCCTAGTCTTAGTTAAGGGCTTAAGTGATGTCTTGGGGAGGCTGGAAAGTTCTTGTGATGCAGTTGCTTTAGAAGGGGCATCCATTTTGCCAAAAGAAGATGATGGTGGCCAAGGAAACAAAAAAATGAAAAGATAA

Network for GWHGAAZE002029

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07734.14	FBA_1	94	186	3.60E-07
PF01398.22	JAB	7	136	2.60E-27
PF13012.7	MitMem_reg	184	298	2.90E-27

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	JAMM

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000338	biological_process	protein deneddylation
GO:0008180	cellular_component	COP9 signalosome
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.188
	SRR3591706	second leaf	1.529
	SRR3591707	mature leaf	0.930
	SRR3591708	Shoot apex	4.476
	SRR3591709	Stem	2.452
	SRR3591710	White floral bud	0.505
	SRR3591711	White flower	0.674
	SRR3591712	Green floral bud	0.597
	SRR3591713	Yellow flower	0.079
SRP173429	SRR8316895	Juvenile bud stage	1.661
	SRR8316896	Juvenile bud stage	2.135
	SRR8316897	Juvenile bud stage	0.582
	SRR8316894	Third green stage	0.418
	SRR8316900	Third green stage	1.518
	SRR8316901	Third green stage	0.838
	SRR8316898	Complete white stage	0.164
	SRR8316899	Complete white stage	2.356
	SRR8316903	Complete white stage	0.259
	SRR8316902	Silver flowering stage	0.059
	SRR8316904	Silver flowering stage	0.045
	SRR8316905	Silver flowering stage	0.029
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.342
SRP132670	SRR6706286	Control	0.822
	SRR6706287	Light intensity 50%	0.995
	SRR6706288	Light intensity 20%	1.020
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.322
	CNS0095593	Slightly white alabastrum(diploid) 2	3.018
	CNS0095594	Slightly white alabastrum(diploid) 3	0.435
	CNS0095595	Whole white alabastrum(diploid) 2	1.345
	CNS0095596	Whole white alabastrum(diploid) 3	1.754
	CNS0095597	Whole white alabastrum(diploid) 4	1.385
	CNS0095598	Silvery flower (diploied) 1	2.686
	CNS0095599	Silvery flower (diploied) 2	1.697
	CNS0095600	Silvery flower (diploied) 3	0.385
	CNS0095601	Golden flower (diploid) 1	2.577
	CNS0095602	Golden flower (diploid) 2	0.988
	CNS0095603	Golden flower (diploid) 3	0.972
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.503
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.057
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.311
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.777
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.837
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.292
	CNS0095610	Silvery flower (tetraploid) 1	0.615
	CNS0095611	Silvery flower (tetraploid) 2	2.421
	CNS0095612	Silvery flower (tetraploid) 3	0.816
	CNS0095613	Golden flower (tetraploid) 1	0.084
	CNS0095614	Golden flower (tetraploid) 2	1.276
	CNS0095615	Golden flower (tetraploid) 3	0.005
CRA001975	CRR073297	Stem 1	1.651
	CRR073298	Stem 2	0.964
	CRR073299	Stem 3	1.592
	CRR073300	Leaf 1	0.617
	CRR073301	Leaf 2	0.644
	CRR073302	Leaf 3	1.176
	CRR073303	Juvenile bud 1	0.893
	CRR073304	Juvenile bud 2	0.146
	CRR073305	Juvenile bud 3	0.373
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.879
	CRR073316	Gold flowering 2	0.263
	CRR073317	Gold flowering 3	0.130
	CRR073318	Tawny withering 1	0.530
	CRR073319	Tawny withering 2	0.447
	CRR073320	Tawny withering 3	0.978