Gene detail

Detail information of GWHGAAZE002030

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009601545.1	1.7387E-140	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	6E-30	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	8E-101	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT3G06240.1	2E-27	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67438771	67440042	+
GWHAAZE00000001	mRNA	67438771	67440042	+
GWHAAZE00000001	exon	67438771	67440042	+
GWHAAZE00000001	CDS	67438771	67440042	+

Transcript Sequence
>GWHTAAZE002034 ATGTCCGATTATATACCTCCTACAGTTATCACGAGCATTCTCTCCAAACTACCGGTAAAAACCCTAGTTCGATTCAGGTGCGTATGCAAATCATGGTGCTCCCTCATTTCAAGCCCTAATTTCATCAACAAACACCTCACTCTCGCCCTCAATAGCCCTCCTCACCTCCTCTTGAAATACCTCTCACTAAGCCCCAAAAGAGAACATTACTCCCTTCGTTTAACCAACGAATCCATCGACGAATTCACCCAACTACACTGCCCTTTTAAGACCGCTTCAGGTAATTTCTTCCGCGTAATCGGCTCTTGCAACGGCTTAATTTGTCTCTCTGATGAATGTTTTGGATTTACTTACACAATCATCATTTGGAACCCTGCAATTAAAAAGTATGTGTCCCTTCCTATGCCTAGGGTTTGCTTTGATTCCTATGGGCCGTACACGTTTTCTCTAGGGTTTGGTTTTCACCCCGATACCATGGATTATAAGGTTGTTAGGATTGCGTATGTTTTTGACGGTGATCACAAGTATATGCTTCCTCCAGAGGTTGAGGTTTATGCTTTTAGTACGGGGGAGTGGAGAACTGTGAGTGCTAACCATGTTACTTGTAAAATTGTTGAGTTCTTTTGGTCTAGCGCTTTTGTTAATGGGGCTGTTCATTGGGTAGCATATAATCGGGATGAGGATGGTCAGTTCTCGAATCGAGTTTTGGTGTTTGATATGGGCAGTGAGCTGTTTAGACAGATAGAATTACCAAATCAGCTAGTTCATGATTACCCGATGGATTTGGCTGTTTCGGCTTCTGGGGATACTATTGTTGTGTTTTTGTATCAAGGTCGAATGACGGGTCAGTTCTGTGATGGTTGCGCTGTGTGGGTGATGGGAGAATATGGTGATGTGGGGTCTTGGAGTAAGCGCTTTTTCGTTGAGTTGGATGGAGGGATATCGAATGTGCTGGGGTTTGGGAATAGTGGGGAATTGCTGCTTGAGAAGTGTATTGGAAGGCTGGTTTCATATCAGCCCGAGAGCAATGAGATTAAGAATCTTGGAATTCGTGGTTTTAAGGACTCTTTCTATGTGGGTAATTATGTCGAGAGCCTTGTTCTTATGGATGCGAAAAAGGGAGTTTTGGGGGACCAGGTCAAGTTTGTTGACGGAGCCGATTCAGAAGATGAACCTGAGTTGACTGAAATGGATCAGGTGCTTGAAGAGCTTCATATCTTCAGGAGGTGGGTTGCTCATAGGATTTTCGCAAAAGTTGCCCTCGAATATTAG

Network for GWHGAAZE002030

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	6	44	9.90E-09
PF07734.14	FBA_1	213	311	1.30E-05
PF19112.1	VanA_C	5	30	9.30E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.468
	SRR3591706	second leaf	3.972
	SRR3591707	mature leaf	3.965
	SRR3591708	Shoot apex	3.569
	SRR3591709	Stem	1.487
	SRR3591710	White floral bud	6.316
	SRR3591711	White flower	6.689
	SRR3591712	Green floral bud	6.590
	SRR3591713	Yellow flower	4.356
SRP173429	SRR8316895	Juvenile bud stage	6.366
	SRR8316896	Juvenile bud stage	6.056
	SRR8316897	Juvenile bud stage	4.477
	SRR8316894	Third green stage	2.904
	SRR8316900	Third green stage	6.324
	SRR8316901	Third green stage	5.069
	SRR8316898	Complete white stage	1.961
	SRR8316899	Complete white stage	7.735
	SRR8316903	Complete white stage	3.708
	SRR8316902	Silver flowering stage	1.946
	SRR8316904	Silver flowering stage	2.871
	SRR8316905	Silver flowering stage	1.180
	SRR8316906	Gold flowering stage	3.473
	SRR8316907	Gold flowering stage	3.315
	SRR8316908	Gold flowering stage	4.137
SRP132670	SRR6706286	Control	6.691
	SRR6706287	Light intensity 50%	7.060
	SRR6706288	Light intensity 20%	7.825
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.917
	CNS0095593	Slightly white alabastrum(diploid) 2	3.757
	CNS0095594	Slightly white alabastrum(diploid) 3	4.126
	CNS0095595	Whole white alabastrum(diploid) 2	4.510
	CNS0095596	Whole white alabastrum(diploid) 3	3.277
	CNS0095597	Whole white alabastrum(diploid) 4	3.252
	CNS0095598	Silvery flower (diploied) 1	7.721
	CNS0095599	Silvery flower (diploied) 2	4.237
	CNS0095600	Silvery flower (diploied) 3	5.904
	CNS0095601	Golden flower (diploid) 1	4.631
	CNS0095602	Golden flower (diploid) 2	9.038
	CNS0095603	Golden flower (diploid) 3	7.689
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.324
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.246
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.166
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.993
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.733
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.334
	CNS0095610	Silvery flower (tetraploid) 1	9.368
	CNS0095611	Silvery flower (tetraploid) 2	9.776
	CNS0095612	Silvery flower (tetraploid) 3	6.188
	CNS0095613	Golden flower (tetraploid) 1	5.342
	CNS0095614	Golden flower (tetraploid) 2	11.041
	CNS0095615	Golden flower (tetraploid) 3	5.537
CRA001975	CRR073297	Stem 1	8.085
	CRR073298	Stem 2	7.578
	CRR073299	Stem 3	8.938
	CRR073300	Leaf 1	4.561
	CRR073301	Leaf 2	4.672
	CRR073302	Leaf 3	4.931
	CRR073303	Juvenile bud 1	4.329
	CRR073304	Juvenile bud 2	5.444
	CRR073305	Juvenile bud 3	5.891
	CRR073306	Third green 1	2.547
	CRR073307	Third green 2	2.220
	CRR073308	Third green 3	3.286
	CRR073309	Second white 1	3.933
	CRR073310	Second white 2	2.151
	CRR073311	Second white 3	2.278
	CRR073312	Silver flowering 1	2.289
	CRR073313	Silver flowering 2	4.626
	CRR073314	Silver flowering 3	2.271
	CRR073315	Gold flowering 1	1.375
	CRR073316	Gold flowering 2	2.513
	CRR073317	Gold flowering 3	3.202
	CRR073318	Tawny withering 1	2.274
	CRR073319	Tawny withering 2	2.130
	CRR073320	Tawny withering 3	1.533