Detail information of GWHGAAZE002036


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009378945.10PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Pyrus x bretschneideri]
Swissprottr|Q8S9M4|PP198_ARATH0Pentatricopeptide repeat-containing protein At2g41080
trEMBLtr|V4U2F2|V4U2F2_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR60072.1}
TAIR10AT2G41080.13E-152Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene6758088567582864+
GWHAAZE00000001mRNA6758088567582864+
GWHAAZE00000001exon6758088567581517+
GWHAAZE00000001exon6758182167582864+
GWHAAZE00000001CDS6758088567581517+
GWHAAZE00000001CDS6758182167582864+
Transcript Sequence

Network for GWHGAAZE002036

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS474335.30E-142
PF01535.21PPR931200.0046
PF01535.21PPR1221510.00028
PF01535.21PPR1531820.027
PF01535.21PPR2252460.034
PF13041.7PPR_22512981.70E-10
PF01535.21PPR3263500.022
PF14432.7DYW_deaminase4245487.90E-42
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.174
SRR3591706second leaf0.524
SRR3591707mature leaf0.912
SRR3591708Shoot apex1.976
SRR3591709Stem0.670
SRR3591710White floral bud1.029
SRR3591711White flower1.130
SRR3591712Green floral bud2.588
SRR3591713Yellow flower1.070
SRP173429 SRR8316895Juvenile bud stage 0.868
SRR8316896Juvenile bud stage 1.256
SRR8316897Juvenile bud stage 0.662
SRR8316894Third green stage 0.894
SRR8316900Third green stage 2.268
SRR8316901Third green stage 1.948
SRR8316898Complete white stage 0.440
SRR8316899Complete white stage 1.894
SRR8316903Complete white stage 0.296
SRR8316902Silver flowering stage0.592
SRR8316904Silver flowering stage1.147
SRR8316905Silver flowering stage0.087
SRR8316906Gold flowering stage 0.703
SRR8316907Gold flowering stage 1.012
SRR8316908Gold flowering stage 0.666
SRP132670SRR6706286Control1.187
SRR6706287Light intensity 50%1.452
SRR6706288Light intensity 20%1.070
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.193
CNS0095593Slightly white alabastrum(diploid) 21.823
CNS0095594Slightly white alabastrum(diploid) 31.776
CNS0095595Whole white alabastrum(diploid) 21.166
CNS0095596Whole white alabastrum(diploid) 31.569
CNS0095597Whole white alabastrum(diploid) 41.927
CNS0095598Silvery flower (diploied) 11.044
CNS0095599Silvery flower (diploied) 21.624
CNS0095600Silvery flower (diploied) 31.786
CNS0095601Golden flower (diploid) 10.914
CNS0095602Golden flower (diploid) 20.928
CNS0095603Golden flower (diploid) 31.172
CNS0095604Slightly white alabastrum(tetraploid) 12.532
CNS0095605Slightly white alabastrum(tetraploid) 21.465
CNS0095606Slightly white alabastrum(tetraploid) 32.677
CNS0095607Whole white alabastrum(tetraploid) 11.557
CNS0095608Whole white alabastrum(tetraploid) 21.062
CNS0095609Whole white alabastrum(tetraploid) 33.178
CNS0095610Silvery flower (tetraploid) 11.480
CNS0095611Silvery flower (tetraploid) 22.059
CNS0095612Silvery flower (tetraploid) 32.237
CNS0095613Golden flower (tetraploid) 10.491
CNS0095614Golden flower (tetraploid) 20.930
CNS0095615Golden flower (tetraploid) 30.414
CRA001975CRR073297Stem 11.056
CRR073298Stem 21.713
CRR073299Stem 30.555
CRR073300Leaf 11.328
CRR073301Leaf 20.953
CRR073302Leaf 30.443
CRR073303Juvenile bud 11.294
CRR073304Juvenile bud 20.582
CRR073305Juvenile bud 30.710
CRR073306Third green 10.365
CRR073307Third green 20.064
CRR073308Third green 30.343
CRR073309Second white 10.432
CRR073310Second white 20.063
CRR073311Second white 30.314
CRR073312Silver flowering 10.255
CRR073313Silver flowering 20.186
CRR073314Silver flowering 30.268
CRR073315Gold flowering 12.075
CRR073316Gold flowering 23.695
CRR073317Gold flowering 32.173
CRR073318Tawny withering 10.991
CRR073319Tawny withering 21.525
CRR073320Tawny withering 30.743