Gene detail

Detail information of GWHGAAZE002043

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006446820.1	1.0933E-127	hypothetical protein CICLE_v10016875mg [Citrus clementina]
COG	YP_003435583.1	1E-50	50S ribosomal protein L5
Swissprot	tr\|P46287\|RL11_MEDSA	3E-129	60S ribosomal protein L11
trEMBL	tr\|A0A067FB73\|A0A067FB73_CITSI	4E-128	Uncharacterized protein {ECO:0000313\|EMBL:KDO63410.1}
TAIR10	AT2G42740.1	1E-88	ribosomal protein large subunit 16A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	67755757	67758688	-
GWHAAZE00000001	mRNA	67755757	67758688	-
GWHAAZE00000001	exon	67755757	67755955	-
GWHAAZE00000001	exon	67756985	67757180	-
GWHAAZE00000001	exon	67758432	67758474	-
GWHAAZE00000001	exon	67758581	67758688	-
GWHAAZE00000001	CDS	67758581	67758688	-
GWHAAZE00000001	CDS	67758432	67758474	-
GWHAAZE00000001	CDS	67756985	67757180	-
GWHAAZE00000001	CDS	67755757	67755955	-

Transcript Sequence
>GWHTAAZE002047 GCTTCAGAGAGGAAATTATCGAATCCGATGAGGGAGATCAAGGTCCAGAAGCTCGTCCTCAACATCTCCGTCGGCGAGAGCGGCGATCGTCTCACCAGAGCCGCTAAGGTGTTGGAACAACTCAGTGGCCAAACCCCTGTGTTCTCCAAAGCAAGGTATACTGTGCGGTCCTTTGGGATTAGGCGTAATGAGAAGATTGCATGCTACGTCACAGTTAGGGGTGACAAGGCTATGCAGCTTCTGGAGAGTGGATTGAAAGTCAAGGAATACGAGCTGTTGAGAAGGAACTTCAGTGACACTGGTTGCTTTGGCTTTGGTATTCAGGAGCATATTGATCTTGGGATTAAGTATGATCCTTCAACTGGCATTTACGGTATGGATTTCTTCGTCGTGCTGGAACGCCCAGGTTACCGTGTTGGCCGCCGCCGTAGGTGCAAGGCTCGCGTTGGAATCCAGCACAGGGTCACCAAGGATGATGCAATGAAGTGGTTCCAGGTCAAGTACGAGGGTGTGATCCTCAACAAATCCCAGAACATCGGGGGTTAA

Network for GWHGAAZE002043

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00281.20	Ribosomal_L5	8	61	3.30E-21
PF00673.22	Ribosomal_L5_C	65	163	2.40E-20
PF03208.20	PRA1	19	159	2.50E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02868	RP-L11e, RPL11	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	644.593
	SRR3591706	second leaf	233.050
	SRR3591707	mature leaf	114.756
	SRR3591708	Shoot apex	778.040
	SRR3591709	Stem	310.951
	SRR3591710	White floral bud	236.613
	SRR3591711	White flower	290.218
	SRR3591712	Green floral bud	482.895
	SRR3591713	Yellow flower	217.489
SRP173429	SRR8316895	Juvenile bud stage	302.000
	SRR8316896	Juvenile bud stage	407.954
	SRR8316897	Juvenile bud stage	217.552
	SRR8316894	Third green stage	182.982
	SRR8316900	Third green stage	587.946
	SRR8316901	Third green stage	531.895
	SRR8316898	Complete white stage	89.465
	SRR8316899	Complete white stage	458.357
	SRR8316903	Complete white stage	133.549
	SRR8316902	Silver flowering stage	83.661
	SRR8316904	Silver flowering stage	77.934
	SRR8316905	Silver flowering stage	42.032
	SRR8316906	Gold flowering stage	142.576
	SRR8316907	Gold flowering stage	149.791
	SRR8316908	Gold flowering stage	188.180
SRP132670	SRR6706286	Control	566.613
	SRR6706287	Light intensity 50%	559.892
	SRR6706288	Light intensity 20%	645.810
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	581.048
	CNS0095593	Slightly white alabastrum(diploid) 2	702.383
	CNS0095594	Slightly white alabastrum(diploid) 3	559.545
	CNS0095595	Whole white alabastrum(diploid) 2	508.101
	CNS0095596	Whole white alabastrum(diploid) 3	617.247
	CNS0095597	Whole white alabastrum(diploid) 4	399.491
	CNS0095598	Silvery flower (diploied) 1	289.582
	CNS0095599	Silvery flower (diploied) 2	263.748
	CNS0095600	Silvery flower (diploied) 3	200.473
	CNS0095601	Golden flower (diploid) 1	227.133
	CNS0095602	Golden flower (diploid) 2	163.720
	CNS0095603	Golden flower (diploid) 3	158.524
	CNS0095604	Slightly white alabastrum(tetraploid) 1	519.524
	CNS0095605	Slightly white alabastrum(tetraploid) 2	524.577
	CNS0095606	Slightly white alabastrum(tetraploid) 3	564.337
	CNS0095607	Whole white alabastrum(tetraploid) 1	302.553
	CNS0095608	Whole white alabastrum(tetraploid) 2	254.555
	CNS0095609	Whole white alabastrum(tetraploid) 3	463.326
	CNS0095610	Silvery flower (tetraploid) 1	187.339
	CNS0095611	Silvery flower (tetraploid) 2	164.186
	CNS0095612	Silvery flower (tetraploid) 3	118.232
	CNS0095613	Golden flower (tetraploid) 1	106.662
	CNS0095614	Golden flower (tetraploid) 2	154.306
	CNS0095615	Golden flower (tetraploid) 3	78.213
CRA001975	CRR073297	Stem 1	545.497
	CRR073298	Stem 2	546.491
	CRR073299	Stem 3	653.218
	CRR073300	Leaf 1	560.331
	CRR073301	Leaf 2	683.789
	CRR073302	Leaf 3	813.067
	CRR073303	Juvenile bud 1	662.856
	CRR073304	Juvenile bud 2	480.709
	CRR073305	Juvenile bud 3	564.703
	CRR073306	Third green 1	83.729
	CRR073307	Third green 2	97.407
	CRR073308	Third green 3	93.417
	CRR073309	Second white 1	117.806
	CRR073310	Second white 2	78.302
	CRR073311	Second white 3	50.285
	CRR073312	Silver flowering 1	95.594
	CRR073313	Silver flowering 2	132.535
	CRR073314	Silver flowering 3	88.614
	CRR073315	Gold flowering 1	248.786
	CRR073316	Gold flowering 2	243.899
	CRR073317	Gold flowering 3	227.288
	CRR073318	Tawny withering 1	543.533
	CRR073319	Tawny withering 2	496.282
	CRR073320	Tawny withering 3	543.776