Gene detail

Detail information of GWHGAAZE002051

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009602914.1	4.26371E-84	PREDICTED: uncharacterized protein LOC104097983 [Nicotiana tomentosiformis]
trEMBL	tr\|M1BTS3\|M1BTS3_SOLTU	7E-74	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400052653}
TAIR10	AT2G30990.2	4E-38	Protein of unknown function (DUF688)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	68077441	68079238	-
GWHAAZE00000001	mRNA	68077441	68079238	-
GWHAAZE00000001	exon	68077441	68078121	-
GWHAAZE00000001	exon	68078372	68079238	-
GWHAAZE00000001	CDS	68078372	68079238	-
GWHAAZE00000001	CDS	68077441	68078121	-

Transcript Sequence
>GWHTAAZE002055 ATGATGTTGCTGAAGAACGAGCTGGAAGACAAACAATTGAATTTAAATCAACCAATTCTATCAGCGAGGCGCTTCTTATCGACATTGCCCGCAAAAGAGGATCAAAAAAGAAAAACCGACAAATCTATCCTCAATATACCTCGCATTCCTTCGTACAAATCAGAATCGAGATTGGGCCCGGTTAGTAACCCTGGAACCATTCCTTTTATCTGGGAACAGAGCCCGGGGAGACCCAAATGTGAAAACACAACAGAGAATTGTTTTGTTGAACTGCATGAAGCTGCTCCAAAGCTTCCTCCAGGGAGAATTTCGAAGGCTAAACTGCATGATTCTGATAAAGTTGATAAAAATGTAACTAAATTTGAGAGCCTGGAAGATACAGTGAAGGAAGATTCTAATTCGGTTGATGGTAATGAAGCTTATTCAGATACGGTTGATTCACTTTCGCAGACTGAATTGTTCTCCTTGAATTTTAGTGTTACTGGTGTAAGTGGAAAGGACAGTCGAGATTTAAAGCGATCGGAAATTTCTTTAACTGATCCATTAACTCGGGATCTTATGATGGGCCGATTTTTGCCAGCAGCTAAAGCAATGGCTTCAGAAACACCTAAATATGCTCCCCAGAAGCAATTGGGAGAGGTGAAGAAGACGGCAAATGATAATAAGAAGTCTCCGCTCCAATATCGGCCCCACATTGTACCGTATTTTGCCGGAGGGAGTGAGAAACGAGAAAATGATGACAAGTATGATGAACGCCAAAAATCATTAAAAGTTTGTGGGCTACTACCGCGATTTTGCCCTGCAAATCCAGTGCCAGGGATGAGTATGAGGACCCGACTTCCGGTGTCTCCTGTTCAGAGAAAACAGCATTCTATTCATGACGGAAGGTTGTTAGGTGGACTAAATACAACTGAATCTTGCTTTTCTAAACAAAAAGAATCTCGCTGTATTCGTCGGGGAGCAGAAAATGGTTCGGGTAGTCCTATTGTTGAGAAAACTTTATACATAGATACTGTGCATAAGGTGGAATCTCCAAAGCTGAAATCATTTTCTCCTGATTCGAAGAGGAAACCGAACTTGACAGAGAACGATTTCAGGATTCTTACAAGAAGTAAAAATTATCATCCTAATGATCAGAAAGATTCATGTATAGATAATGATAGTCCAAATATTGTCGAAGATGTACCAAAAAGGCGGCCTAATGATCGGAAAGATGTGCTGCTATCGACCAGAAATCAAGTTCTTGGGGTGGATGAAGAGGATTTTACTTTCCCGGAAATTAGGGAGAATAGTTGCATAAGCCGTTTGGAGGTTCCGGTTCCTCCTCCTCTGCCCAAATCTCCAACAGATTCGTGGCTTCGTCGTACTTTACCTTCTACGAGTTCCAAAAATCTGTCTGTGTGGTCAAAGACATCATCAGGTGATCTATCTCCAACAGATTCATGGCTTCGTCCTACTTTACCTTCTACGAGTTCCAAAAATCTGTCTGTGTGGTCAAAGACATCATCCGGTGATCTCGTGTTGAAGACAAACGCCAAAACTACATAA

Network for GWHGAAZE002051

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01842.26	ACT	76	139	5.20E-11
PF10369.10	ALS_ss_C	155	227	1.70E-27
PF13710.7	ACT_5	359	420	3.40E-10
PF10369.10	ALS_ss_C	431	472	9.00E-11
PF05097.13	DUF688	9	279	2.50E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01653	E2.2.1.6S, ilvH, ilvN	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Butanoate metabolism	map00650
		C5-Branched dibasic acid metabolism	map00660
		Valine, leucine and isoleucine biosynthesis	map00290
		Pantothenate and CoA biosynthesis	map00770

Gene Ontology

GO term	Ontology	Name
GO:0009082	biological_process	branched-chain amino acid biosynthetic process
GO:1990610	molecular_function	acetolactate synthase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.136
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.031
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.725
	SRR8316896	Juvenile bud stage	2.384
	SRR8316897	Juvenile bud stage	0.192
	SRR8316894	Third green stage	0.125
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.081
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.085
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.011
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.009
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.068
	CNS0095593	Slightly white alabastrum(diploid) 2	0.048
	CNS0095594	Slightly white alabastrum(diploid) 3	0.312
	CNS0095595	Whole white alabastrum(diploid) 2	0.105
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.050
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.312
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.135
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.040
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.024
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.014
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.062
	CRR073298	Stem 2	0.791
	CRR073299	Stem 3	1.435
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.044
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.036
	CRR073320	Tawny withering 3	0.000