Gene detail

Detail information of GWHGAAZE002056

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13112.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068UXT4\|A0A068UXT4_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_73 {ECO:0000313\|EMBL:CDP13112.1}
TAIR10	AT1G05055.1	2E-126	general transcription factor II H2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	68217886	68219332	-
GWHAAZE00000001	mRNA	68217886	68219332	-
GWHAAZE00000001	exon	68218883	68219332	-
GWHAAZE00000001	exon	68217886	68218353	-
GWHAAZE00000001	CDS	68218883	68219332	-
GWHAAZE00000001	CDS	68217886	68218353	-

Transcript Sequence
>GWHTAAZE002060 ATGGATTTTCGACCAAGCCGAATGGTAGTAGTTGCAAAACAAGTTGAAGCTTTCATTAGAGAGTTCTTTGATCAGAACCCACTGAGTCAAATTGGTCTGGTAACTATAAAAGATGGGGTTGCTCAGTGTTTAACTGATCTTGGTGGCAGCCCGGAGTCTCATATTAAAGCCTTGGCAGGAAAATTGGAGTGCTCAGGTGATTCCTCCATTCAAAATGCTTTAGATCTTGTACACGACTTTCTTAATCAAATCCCATCATACGGCCATCGCGAAGTTCTTATCTTGTATTCGGCTCTTAGTACTTGTGATCCGGGCGATATAATGGAAACCATCCAAAAATGCAAGAAATCTAAGATGAGGTGTTCGGTTATCGGTCTCTCTGCAGAACTATTTATCTGTAAACATCTTTGTCAAGAAACTGGTGGAATGTACTCTGTCGCATTGGATGAGTCCCACTTAAAAGAGTTAGTGCTAGAGCATGCACCACCACCTCCAGCTATAGCCGAATTCGCAATTGCAAATTTGATCAAGATGGGATTTCCTCAAAGAGCAGCTGAGGGTGTTATCTCAATTTGTTCATGTCATAAAGAAGCTAAAGTTGGTGGGGGCTATACTTGTCCAAGATGCAAAGCTCGTGTTTGTGAGCTGCCTACCGAATGCCGTATATGTGGGTTGACCCTTGTTTCTTCTCCGCATTTAGCGAGGTCATATCACCATTTGTTCCCAATAACGCCATTTGATGACGTGGGACCCTCTGTTCTAAATAGTGCTCATCACAAGCTGCCAAAAAAATGTTTCGGTTGCCAGCAAAGTCTCTTGAATCCTGGTAAGTACAGCGTACCAAAAGTTAAATTTTTGCAAGCTAATGATACGTTAAAATCTTATGCTGCCCATCAGTTGATAGCATTTAGTAAATAA

Network for GWHGAAZE002056

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04056.15	Ssl1	1	181	1.10E-82
PF00638.19	Ran_BP1	37	142	7.40E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03142	TFIIH2, GTF2H2, SSL1	Basal transcription factors	map03022
K03142	TFIIH2, GTF2H2, SSL1	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name
GO:0046907	biological_process	intracellular transport
GO:0006289	biological_process	nucleotide-excision repair
GO:0006351	biological_process	transcription, DNA-templated
GO:0000439	cellular_component	transcription factor TFIIH core complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.110
	SRR3591706	second leaf	11.522
	SRR3591707	mature leaf	12.730
	SRR3591708	Shoot apex	18.331
	SRR3591709	Stem	26.340
	SRR3591710	White floral bud	24.940
	SRR3591711	White flower	29.290
	SRR3591712	Green floral bud	28.107
	SRR3591713	Yellow flower	24.503
SRP173429	SRR8316895	Juvenile bud stage	16.020
	SRR8316896	Juvenile bud stage	20.450
	SRR8316897	Juvenile bud stage	10.059
	SRR8316894	Third green stage	10.306
	SRR8316900	Third green stage	28.857
	SRR8316901	Third green stage	27.066
	SRR8316898	Complete white stage	10.339
	SRR8316899	Complete white stage	33.174
	SRR8316903	Complete white stage	16.096
	SRR8316902	Silver flowering stage	10.953
	SRR8316904	Silver flowering stage	17.311
	SRR8316905	Silver flowering stage	7.397
	SRR8316906	Gold flowering stage	23.154
	SRR8316907	Gold flowering stage	22.426
	SRR8316908	Gold flowering stage	26.545
SRP132670	SRR6706286	Control	18.604
	SRR6706287	Light intensity 50%	19.019
	SRR6706288	Light intensity 20%	19.151
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.412
	CNS0095593	Slightly white alabastrum(diploid) 2	19.912
	CNS0095594	Slightly white alabastrum(diploid) 3	16.409
	CNS0095595	Whole white alabastrum(diploid) 2	22.288
	CNS0095596	Whole white alabastrum(diploid) 3	21.402
	CNS0095597	Whole white alabastrum(diploid) 4	21.484
	CNS0095598	Silvery flower (diploied) 1	23.788
	CNS0095599	Silvery flower (diploied) 2	16.833
	CNS0095600	Silvery flower (diploied) 3	27.007
	CNS0095601	Golden flower (diploid) 1	17.436
	CNS0095602	Golden flower (diploid) 2	24.657
	CNS0095603	Golden flower (diploid) 3	25.069
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.812
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.480
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.134
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.309
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.516
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.219
	CNS0095610	Silvery flower (tetraploid) 1	22.819
	CNS0095611	Silvery flower (tetraploid) 2	21.001
	CNS0095612	Silvery flower (tetraploid) 3	17.755
	CNS0095613	Golden flower (tetraploid) 1	15.353
	CNS0095614	Golden flower (tetraploid) 2	22.091
	CNS0095615	Golden flower (tetraploid) 3	24.172
CRA001975	CRR073297	Stem 1	22.562
	CRR073298	Stem 2	21.526
	CRR073299	Stem 3	16.324
	CRR073300	Leaf 1	22.874
	CRR073301	Leaf 2	23.681
	CRR073302	Leaf 3	18.909
	CRR073303	Juvenile bud 1	21.490
	CRR073304	Juvenile bud 2	17.950
	CRR073305	Juvenile bud 3	24.016
	CRR073306	Third green 1	8.386
	CRR073307	Third green 2	8.081
	CRR073308	Third green 3	11.088
	CRR073309	Second white 1	9.333
	CRR073310	Second white 2	12.232
	CRR073311	Second white 3	11.327
	CRR073312	Silver flowering 1	11.848
	CRR073313	Silver flowering 2	11.915
	CRR073314	Silver flowering 3	11.029
	CRR073315	Gold flowering 1	5.505
	CRR073316	Gold flowering 2	14.165
	CRR073317	Gold flowering 3	7.755
	CRR073318	Tawny withering 1	26.731
	CRR073319	Tawny withering 2	18.038
	CRR073320	Tawny withering 3	24.487