Gene detail

Detail information of GWHGAAZE002060

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009795721.1	2.3076E-160	PREDICTED: 14-3-3 protein 9 [Nicotiana sylvestris]
Swissprot	tr\|Q96453\|1433D_SOYBN	3E-159	14-3-3-like protein D
trEMBL	tr\|Q948K3\|Q948K3_TOBAC	4E-160	14-3-3 protein {ECO:0000313\|EMBL:BAB68527.1}
TAIR10	AT2G42590.3	1E-111	general regulatory factor 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	68419204	68424920	+
GWHAAZE00000001	mRNA	68419204	68424920	+
GWHAAZE00000001	exon	68419204	68419276	+
GWHAAZE00000001	exon	68420562	68420868	+
GWHAAZE00000001	exon	68420955	68421042	+
GWHAAZE00000001	exon	68422598	68422707	+
GWHAAZE00000001	exon	68422802	68422959	+
GWHAAZE00000001	exon	68424772	68424824	+
GWHAAZE00000001	exon	68424918	68424920	+
GWHAAZE00000001	CDS	68419204	68419276	+
GWHAAZE00000001	CDS	68420562	68420868	+
GWHAAZE00000001	CDS	68420955	68421042	+
GWHAAZE00000001	CDS	68422598	68422707	+
GWHAAZE00000001	CDS	68422802	68422959	+
GWHAAZE00000001	CDS	68424772	68424824	+
GWHAAZE00000001	CDS	68424918	68424920	+

Transcript Sequence
>GWHTAAZE002064 ATGGCTTCATCCACAGAACGCGAAAACTGTGTTTACAAAGCCAAGCTTGCCGAACAGGCCGAACGTTACGATGAAATGGTAGAGGCAATGAAGGAGGTTGCAAACATGGACGTGGAATTGACTGTGGAAGAGAGGAATTTGCTATCAGTTGGGTACAAGAACGTGATTGGGTCTCGTAGGGCTTCGTGGAGGATTTTGTCATCTATCGAGCAGAAAGAAGAGTCGAGAGGGAATGATCAAAACGCCAAGAGGATCAGGGAGTATAGACAGAAGGTCGAATCTGAGCTCACCACCATCTGTAATGATATCATGAGTGTAATTGATGAGCATCTTATTCCTTCTGCTGGTGCTGGTGAATCAACTGTGTTTTACTATAAGATGAAAGGGGATTATTATAGGTATCTTGCAGAGTTTAAGTCTGGAAATGAGAGGAAGGAGGTTGCTGATCTTTCAATGAAAGCCTATGAGGCTGCTACCAGTGCCGCAGAGGCTGAGTTGCCTACTACACATCCAATTCGGTTGGGATTGGCCTTAAATTATTCAGTCTTCTACTATGAGATTATGAATTCGCCTGAAAGGGCTTGTCACCTAGCAAAGACGGCTTTTGATGAAGCAATCTCCGAGCTTGATGCACTGAATGAGGAGTCATACAAAGATAGCACTTTAATTATGCAGCTTCTTAGGGACAACCTTACCTTGTGGACCTCTGACATTCCTGAAGAAGGAGGTAATTACGAAGACTCCCACAAAGTTGATGCTGTTCCCAAAACTGGAGGTGCCACTGCAGAGTGA

Network for GWHGAAZE002060

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00244.21	2014/3/3	13	235	1.30E-106
PF04043.16	PMEI	8	150	2.10E-24
PF01095.20	Pectinesterase	180	480	6.40E-137

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06630	YWHAE	MAPK signaling pathway - yeast	map04011
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		PI3K-Akt signaling pathway	map04151
		Cell cycle	map04110
		Oocyte meiosis	map04114
		NOD-like receptor signaling pathway	map04621
		Neurotrophin signaling pathway	map04722

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0004857	molecular_function	enzyme inhibitor activity
GO:0030599	molecular_function	pectinesterase activity
GO:0019904	molecular_function	protein domain specific binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	307.362
	SRR3591706	second leaf	155.209
	SRR3591707	mature leaf	117.480
	SRR3591708	Shoot apex	269.018
	SRR3591709	Stem	256.241
	SRR3591710	White floral bud	203.659
	SRR3591711	White flower	250.592
	SRR3591712	Green floral bud	193.618
	SRR3591713	Yellow flower	253.322
SRP173429	SRR8316895	Juvenile bud stage	141.580
	SRR8316896	Juvenile bud stage	187.405
	SRR8316897	Juvenile bud stage	103.923
	SRR8316894	Third green stage	73.476
	SRR8316900	Third green stage	236.560
	SRR8316901	Third green stage	226.338
	SRR8316898	Complete white stage	108.326
	SRR8316899	Complete white stage	297.283
	SRR8316903	Complete white stage	160.774
	SRR8316902	Silver flowering stage	86.622
	SRR8316904	Silver flowering stage	118.871
	SRR8316905	Silver flowering stage	65.228
	SRR8316906	Gold flowering stage	195.105
	SRR8316907	Gold flowering stage	180.169
	SRR8316908	Gold flowering stage	207.936
SRP132670	SRR6706286	Control	342.811
	SRR6706287	Light intensity 50%	330.820
	SRR6706288	Light intensity 20%	341.147
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	168.880
	CNS0095593	Slightly white alabastrum(diploid) 2	227.676
	CNS0095594	Slightly white alabastrum(diploid) 3	148.086
	CNS0095595	Whole white alabastrum(diploid) 2	184.142
	CNS0095596	Whole white alabastrum(diploid) 3	184.175
	CNS0095597	Whole white alabastrum(diploid) 4	173.008
	CNS0095598	Silvery flower (diploied) 1	206.989
	CNS0095599	Silvery flower (diploied) 2	225.967
	CNS0095600	Silvery flower (diploied) 3	244.466
	CNS0095601	Golden flower (diploid) 1	211.217
	CNS0095602	Golden flower (diploid) 2	265.487
	CNS0095603	Golden flower (diploid) 3	258.690
	CNS0095604	Slightly white alabastrum(tetraploid) 1	231.591
	CNS0095605	Slightly white alabastrum(tetraploid) 2	193.619
	CNS0095606	Slightly white alabastrum(tetraploid) 3	417.486
	CNS0095607	Whole white alabastrum(tetraploid) 1	132.823
	CNS0095608	Whole white alabastrum(tetraploid) 2	138.492
	CNS0095609	Whole white alabastrum(tetraploid) 3	272.257
	CNS0095610	Silvery flower (tetraploid) 1	274.010
	CNS0095611	Silvery flower (tetraploid) 2	320.451
	CNS0095612	Silvery flower (tetraploid) 3	277.414
	CNS0095613	Golden flower (tetraploid) 1	208.751
	CNS0095614	Golden flower (tetraploid) 2	261.299
	CNS0095615	Golden flower (tetraploid) 3	214.746
CRA001975	CRR073297	Stem 1	304.325
	CRR073298	Stem 2	339.035
	CRR073299	Stem 3	377.970
	CRR073300	Leaf 1	388.776
	CRR073301	Leaf 2	364.889
	CRR073302	Leaf 3	403.503
	CRR073303	Juvenile bud 1	447.902
	CRR073304	Juvenile bud 2	321.020
	CRR073305	Juvenile bud 3	479.800
	CRR073306	Third green 1	193.663
	CRR073307	Third green 2	216.527
	CRR073308	Third green 3	205.808
	CRR073309	Second white 1	254.675
	CRR073310	Second white 2	171.472
	CRR073311	Second white 3	150.083
	CRR073312	Silver flowering 1	133.592
	CRR073313	Silver flowering 2	177.156
	CRR073314	Silver flowering 3	121.011
	CRR073315	Gold flowering 1	119.674
	CRR073316	Gold flowering 2	128.539
	CRR073317	Gold flowering 3	140.213
	CRR073318	Tawny withering 1	410.649
	CRR073319	Tawny withering 2	337.524
	CRR073320	Tawny withering 3	383.984