Gene detail

Detail information of GWHGAAZE002084

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009608525.1	1.9547E-75	PREDICTED: seed biotin-containing protein SBP65-like isoform X2 [Nicotiana tomentosiformis]
Swissprot	tr\|Q39846\|SBP65_SOYBN	3E-29	Seed biotin-containing protein SBP65
trEMBL	tr\|M1BRQ8\|M1BRQ8_SOLTU	1E-69	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400051428}
TAIR10	AT2G42560.1	0.000000009	late embryogenesis abundant domain-containing protein / LEA domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	68886593	68890363	+
GWHAAZE00000001	mRNA	68886593	68890363	+
GWHAAZE00000001	exon	68886593	68886710	+
GWHAAZE00000001	exon	68886998	68887158	+
GWHAAZE00000001	exon	68889707	68890363	+
GWHAAZE00000001	CDS	68886593	68886710	+
GWHAAZE00000001	CDS	68886998	68887158	+
GWHAAZE00000001	CDS	68889707	68890363	+

Transcript Sequence
>GWHTAAZE002088 ATGGCGTCGGAGCAAGTGAGGAGAGAGAACAAGAATGATGAGGGAAAGATAAGAGTGGAGAAAGATATAGTGCCTAAAATGACTAGTCATTTTGAGGCACTCGTTGTGAAGGAGAGAGAAGAAATTTCAAAGTATAGACAAAGTGCACAACAAAACTCAATGGAGTCCATTAGGGCTGCCGAGGAGCGGTACGCTGCCAAGGCAAAGGAGCTGGGCGCCTCCGCATTGCAAAATGTCAAACAATCTACCCGTCCTGTGGTGGAATATACCGCCGCGAAGGGTGCACAAGCAAAAGACACAGTTGTACAAGGGGCTCAAACAACTGCTGAAATCGCCTCCGAGAAAGGTCAAGCCATTAAGGACACCGCCCTCGAGAAGGGTCAGCAAGGGTATGCCACCACCAAGGACACCCTAGCAAATGTGGGCAAGACCACAGCTGAAAAAACCGCCCAGGCCAAAGATTTTGCTCTACAAAAGGCCACGCTAGCCAACGACACGGTGGCCTCCACAGGCGAAACCACTGCCCACTATGTCAGTGAAAAAGCAGCTGCTGCAAAGGATGTGACAGTGGAGGGGGGCAAGGGGGTGGTTGGGCATGCTGGGAAGGTGGCTGCAGTGGTGAAAGACAAGGCAGTGGTGGCCGGTTGGGGGGCTGCAGAGTATACCTTAGGTAAGGCGGTGGATACAACAAAGGCGGTGGCCGGCGCTACCGCCACTGCGGCGGGATTTGCTGGTGAAAAGGCGGTGGCAGCGAAAGATGTGGTGGCCAATGTGGGGTATAGTGCTAAAGATTATGCGGGCGAGAAGTTGGCTCATGCAAAGGATGCTGTGGTTGCAACTGAAGAGAGTGCAAAGGAGTTTGCGGCTAGGAAAAAGGCTGAGGCTCAAAAGGAATTGGAAGCCAAGAAGTCAACTCAATCGAAGGCGAGATTATAA

Network for GWHGAAZE002084

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01184	E3.2.1.15	Metabolic pathways	map01100
K01184	E3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.339
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.030
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.038
	SRR3591710	White floral bud	0.608
	SRR3591711	White flower	0.797
	SRR3591712	Green floral bud	0.358
	SRR3591713	Yellow flower	0.244
SRP173429	SRR8316895	Juvenile bud stage	0.157
	SRR8316896	Juvenile bud stage	0.907
	SRR8316897	Juvenile bud stage	0.860
	SRR8316894	Third green stage	0.277
	SRR8316900	Third green stage	1.373
	SRR8316901	Third green stage	2.145
	SRR8316898	Complete white stage	0.302
	SRR8316899	Complete white stage	0.275
	SRR8316903	Complete white stage	0.502
	SRR8316902	Silver flowering stage	0.357
	SRR8316904	Silver flowering stage	0.407
	SRR8316905	Silver flowering stage	0.360
	SRR8316906	Gold flowering stage	0.341
	SRR8316907	Gold flowering stage	0.475
	SRR8316908	Gold flowering stage	0.322
SRP132670	SRR6706286	Control	0.380
	SRR6706287	Light intensity 50%	0.358
	SRR6706288	Light intensity 20%	0.112
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.294
	CNS0095593	Slightly white alabastrum(diploid) 2	0.632
	CNS0095594	Slightly white alabastrum(diploid) 3	1.655
	CNS0095595	Whole white alabastrum(diploid) 2	0.289
	CNS0095596	Whole white alabastrum(diploid) 3	1.170
	CNS0095597	Whole white alabastrum(diploid) 4	0.213
	CNS0095598	Silvery flower (diploied) 1	2.573
	CNS0095599	Silvery flower (diploied) 2	1.570
	CNS0095600	Silvery flower (diploied) 3	2.819
	CNS0095601	Golden flower (diploid) 1	1.872
	CNS0095602	Golden flower (diploid) 2	1.696
	CNS0095603	Golden flower (diploid) 3	2.151
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.513
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.491
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.497
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.060
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.197
	CNS0095610	Silvery flower (tetraploid) 1	0.866
	CNS0095611	Silvery flower (tetraploid) 2	0.392
	CNS0095612	Silvery flower (tetraploid) 3	0.136
	CNS0095613	Golden flower (tetraploid) 1	0.151
	CNS0095614	Golden flower (tetraploid) 2	0.153
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.277
	CRR073298	Stem 2	0.193
	CRR073299	Stem 3	0.430
	CRR073300	Leaf 1	0.154
	CRR073301	Leaf 2	0.358
	CRR073302	Leaf 3	0.147
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.245
	CRR073306	Third green 1	0.039
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.229
	CRR073310	Second white 2	0.239
	CRR073311	Second white 3	0.099
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.054
	CRR073315	Gold flowering 1	0.098
	CRR073316	Gold flowering 2	0.006
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.403
	CRR073319	Tawny withering 2	0.785
	CRR073320	Tawny withering 3	0.194