Gene detail

Detail information of GWHGAAZE002102

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002275272.1	PREDICTED: uncharacterized protein LOC100250601 isoform X2 [Vitis vinifera]
trEMBL	tr\|F6H5H0\|F6H5H0_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47311.1}
TAIR10	AT1G28420.1	homeobox-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	69292802	69304619	+
GWHAAZE00000001	mRNA	69292802	69304619	+
GWHAAZE00000001	exon	69292802	69292963	+
GWHAAZE00000001	exon	69293574	69293663	+
GWHAAZE00000001	exon	69293834	69293914	+
GWHAAZE00000001	exon	69294206	69294428	+
GWHAAZE00000001	exon	69295403	69295503	+
GWHAAZE00000001	exon	69296223	69296309	+
GWHAAZE00000001	exon	69296619	69296771	+
GWHAAZE00000001	exon	69296892	69297047	+
GWHAAZE00000001	exon	69297117	69297143	+
GWHAAZE00000001	exon	69297328	69297384	+
GWHAAZE00000001	exon	69297463	69297570	+
GWHAAZE00000001	exon	69297690	69297899	+
GWHAAZE00000001	exon	69298173	69298853	+
GWHAAZE00000001	exon	69299314	69299393	+
GWHAAZE00000001	exon	69299465	69299531	+
GWHAAZE00000001	exon	69299621	69299845	+
GWHAAZE00000001	exon	69301484	69301847	+
GWHAAZE00000001	exon	69301914	69302020	+
GWHAAZE00000001	exon	69302860	69302964	+
GWHAAZE00000001	exon	69303046	69303303	+
GWHAAZE00000001	exon	69303780	69304619	+
GWHAAZE00000001	CDS	69292802	69292963	+
GWHAAZE00000001	CDS	69293574	69293663	+
GWHAAZE00000001	CDS	69293834	69293914	+
GWHAAZE00000001	CDS	69294206	69294428	+
GWHAAZE00000001	CDS	69295403	69295503	+
GWHAAZE00000001	CDS	69296223	69296309	+
GWHAAZE00000001	CDS	69296619	69296771	+
GWHAAZE00000001	CDS	69296892	69297047	+
GWHAAZE00000001	CDS	69297117	69297143	+
GWHAAZE00000001	CDS	69297328	69297384	+
GWHAAZE00000001	CDS	69297463	69297570	+
GWHAAZE00000001	CDS	69297690	69297899	+
GWHAAZE00000001	CDS	69298173	69298853	+
GWHAAZE00000001	CDS	69299314	69299393	+
GWHAAZE00000001	CDS	69299465	69299531	+
GWHAAZE00000001	CDS	69299621	69299845	+
GWHAAZE00000001	CDS	69301484	69301847	+
GWHAAZE00000001	CDS	69301914	69302020	+
GWHAAZE00000001	CDS	69302860	69302964	+
GWHAAZE00000001	CDS	69303046	69303303	+
GWHAAZE00000001	CDS	69303780	69304619	+

Transcript Sequence
>GWHTAAZE002106 ATGTTTGTCGATTGCCCTCATGTGATGTATGCTGTTGTTGGTTTTTCATTATTTTATACTCAGTGTGCTGTATTTATTGACTCTGTGTCATTGTTTTCACTGATTGTTGAATTGTACTGGTATTCTCTTCGAGCTCTATACATAGGAGTATTGACTCTTGTGAGCGAAGAGGCTAGAATTGCAAGGGAAGTCGAAGCCCATGAGAAAAGGATTCGGAAGGAGCTTGAAAAGCAAGATATTTTGAGACGAAAGCGAGAGGAGGAGAGATACCAGAGAGAGCAAAGGCGTGAAATGGAACGAAGGGAGAAGTTTTTACAGAAAGAATCTATTAGAGCTGAGAAACTGAGACTAAAAGAAGAAATGCGCAAAGAAAAAGAGGCTGCTAGGCTTAAAGCAGCTAATGAAAGGGCTACTGCTCGAAGAATTGCTAAAGAAGCAACAGAACTTATTGACGATGAACGTGTGGAGCTCATGGATTTAGCAACAGCGAGGCTGGGGTTGCCCTCGTTGTTGTCTCTTGACAGTGAAACCTTGCAAAATCTCGAGTCATTCAGAGATATGCTCACTGAGTTCCCACCCAAGTCTGTTCGATTGAAAATGCCATTTGCAGTTCAGCCCTGGATTTATTCCGAGGAGAATACAGGCAATCTTCTTATGGTTTGGAGATTTTTAATTACTTTTGCTGATGTTCTTGGGCTTTGGCCGTTTACTCTGGATGAATTTGTTCAAGCCCTTCACGATTATGATTCAAGGTTGTTGGGTGAGATACATGTAGCTCTTTTGAGATCCATTATTAAAGATATTGAAGATGTAGCAAGGACGCCCTCTACTGTGTTGGGGGCAAATCAACATAGTGCTGCTAATCCTGGAGGAGGGCATCCACAGATTGTTGAAGGGGCATATGCTTGGGGTTTTGACATACGCAGTTGGCAGTATCACTTACATCCATTGACATGGCCTGAGATATTGCGGCAATTTGCTCTCTCTGCAGGGTTTGGGCCTAAATTGAAGAAAAGGAATGTTGAGCAATCATATCTTCGTGATGAAAATGAGGGAAGGGAGGAGGGACTTCTTGAAGCAGACTACAAAGAAGCCAGGATACCACCCTATTTCTCCATAGGGTGTACTGAGGTGGGGGATAAAGAGCGCTCTCCTTACTTTAAACAAATCCTTGCTGTTCGTGTTTCTTTAGAACCAATCGACTTACTTGGAATAAACCTGGCTGTAGCAATACTTAAATCTACTGGTACTGATGGTGAAGATGTCATCTCTAATCTACGCAATGGAGTTGCAGCTGAAAATGCTCTCGCCATTATGCAAGAAAGGGGTTTCTCTAATCCACGTCGATCGAGGCATCGCTTGACACCCGGCACCGTAAAATTTGCTGCATTTCATGTTCTTTCACTAGAGGGAAGCAAAGGTCTTACGATATTAGATGTTGCAGAAAGGATTCAGAAATCTGGTCTTCGAGACCTCACTACAAGCAAGACACCAGAAGCGTCTATTGCCGCTGCTTTATCGAGAGATACAAAGCTGTTTGAAAGAACAGCCCTTCAACATATTGTGTGGGCCCCTTATAGGAAGGATCCTGCTGATGCTGAGGCTATACTTTCTGAAGCCAGGGAAAAAATTCAGGTGTTTAAAAACGGATATTTTGAGGGAGATGATGTTGAAAGAGAGGATGTTGAAAGAGACGAAGATTCTGAAAGTGATGTTGCTGAGGATTTGGAGGTTGATGATTTGGGTACCGAATTGAAACCGGACAAAGAAGCCCTTTCTTGTGAAGGAAATACATTTCAAGGAAAAATAGGCTTGGGAAATGGAAAGGAAACATTACAAGATGGGATTGATAATATGAGTAGTGGTTTAACTTCTATGGATTCTGAAGGCTTGAAAGAGGTAAAAGTTACTGGTGCTAGTGGCGGTAGATCGATCGATTTTGTTGGGGTTCACAATGAGGTGACTAACGCTGATCAAGAAAGTAGTGTGATCGATGAAAGCAACTGTGGCGAACCGTGGGTTCATGCGCTTACGGAAGGGGAATACTCTGACCTGAGTGTTGAAGAGCGCCTTAGTGCCCTTGTTGCCTTAATTGGTGTTGCAAATGAAGGAAACTCTATCCGCGTTGTTCTCGAGGAACGCTTGGAAGCAGCGAATGCTTTGAAGAAGCAGATATGGGCAGAGGCACAAGTGGATAAACGTCGTATGAAAGAGGAAGGGCAGAAAAGTCCTTTTGCTGGTGATGACAAAATGATTTACCCTTTGGCGATCCACAGAATGATACAAGCTGGATATGCTGCTGCAGAGAAGTCAAGGTCGCAGTTAAAAGCTTTCATTGGTCACAAAGCAGAGGAGATGTATGTATATAGGTCTTTGCCTCTCGGACAAGACCGCAGGCGGAATCGCTACTGGCAGTTTATTACATCTTCTTCCCGAAATGACCCTGGCTCTGGCAGGATCTTTGTTGAGCTACGTGATGGTCATTGGCGGCTTATTGATTCTGAAGAGAGTTTCGATGCTATATTGGCGTCATTGGATGTAAGAGGGGTTAGGGAGTCTAATCTGCTTTCAATGTTGCAAAGGATTGAAGTGTCTTTCAAGGAAACCGTGAGGAAGAACCGTACTGTGAAAACAGAAATTTCAGAAATGGCTCCTCCTAACTCTAATTGCAGTGCCGCCAGCATAATAGATAGCCCTAACAGCACTGTTTGTGATATGACAGAATCCTCATCATCTTTTGCAATTGGGCTGGGGAGGAATGAAAAAGAGAAAAATGGGGCGTCAAAGAGATATCAAGAATTTGAAAAGTGGATATGGGACGAATGTTTTAATGCTTCGATATTATGTGCCTTGAAATATGGGAAGACAAGATCTGAATGCAAAGAGAAAAATGGGGAGGCTGACTGGACTTCTCACAATGTTGGGTCATCCCTTCCCCCGAGGATCAGATTGCTCAAAGCGCAATTAGCAATGATAGAGGTCTCTGTTTTAGTGGGGGCTCTTCAACCTGCTTGGTCAGATGACTTCCGAGAAACTTGGGCTGTGAAGCTGCATAATGCGTCATCAGCTGAAGACCTTCTCCAGATTCTGACAATGTTGGAGAGTGCCGTAAAGAGGGACTTTTTGTCCTTGAATTTTGAGACAACCACTGAATTGTTGGGTTCCAGTAACCCTAAGATCGCTAATAGATCCTCCATTGCTGAAACGGTTTCCGTACTTCCTTGGTTACCTCAAACAACATCTTCTGTGGCACTAAGGCTCATGGAACTTGATTCCTCTATTTTTTACACGCTTGAGCAGAAAGAGGAATCTCAAAAGGACAAAGGAGGCTTGGATTTAATGGCAATTCCAACAAAACACACCGTTGTGAAGAACGTCCCCGACTATCAACTAGCTGAAGCCCCACGCGAACCTGGATATCAGCATCAAGATCCGTGGACCGACCCAGGAAGCGGACCCACCAGCTCTGGACGAGGCCGAGGGCGTGGGCGAGGCCGTGGTGGTCGTCCCAGAGGTGGAAGACCTCAAAAACAGGTCATCGGATCCAGATCTGAATCAGGCCCACAAAGTACCACAACAAACAACGAGAGGCTTGGGCAATTAGTGGGGTGGAAAGGGCGGGCCCGTGGGCGGGGTGGACGTAAGAGGGGCCGCCGCACCACTAGAAGCAGGCAAAAGCCTGTCAAAAGAGTGACGGATATCACCGGTGAGAGAGAGAATGCTAGAGTCACCACCGCCTTTGACACAAGTTCAGTGCAGCCAGACTGGAACATGGAAGAAACTACTACGCCGGTACGAGCTGAGAGCGCTGAGAATGTTAGCAGTTCTGATAGATCAGAATACGATGATGATGATACCATTGGCCCGCCAATTGGTGACGAGTACGATGATCTAATGGCGGCAGGCGGCAGCTACTCTGGTGTATTCGGCAGCAATAAGCCTGAGTACCTAATGGAGGGTGGTGTTGACTATGGTGATGAGGATGATGATTATGTCAATGATGACGAGGAGGATGATGTTGAGGGCGAAGATTTTGAGGAAGATGAACAGGGAAATGTAGACGTTGAAGGATATTTCAATGGCGACTCGGACGAGGAGGAGATGAGGGATATAAGCAGAGGAGTGCAAATCGGGAACCCGGATGAAGTTACGGAATCTTCATCATCAGAATATAGTGATTAA

Network for GWHGAAZE002102

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02791.18	DDT	213	267	9.30E-18
PF05066.14	HARE-HTH	457	516	1.50E-13
PF15612.7	WHIM1	672	712	9.50E-08
PF15613.7	WSD	789	862	9.90E-14

Protein Sequence

>GWHPAAZE002104
MFVDCPHVMYAVVGFSLFYTQCAVFIDSVSLFSLIVELYWYSLRALYIGVLTLVSEEARIAREVEAHEKRIRKELEKQDILRRKREEERYQREQRREMERREKFLQKESIRAEKLRLKEEMRKEKEAARLKAANERATARRIAKEATELIDDERVELMDLATARLGLPSLLSLDSETLQNLESFRDMLTEFPPKSVRLKMPFAVQPWIYSEENTGNLLMVWRFLITFADVLGLWPFTLDEFVQALHDYDSRLLGEIHVALLRSIIKDIEDVARTPSTVLGANQHSAANPGGGHPQIVEGAYAWGFDIRSWQYHLHPLTWPEILRQFALSAGFGPKLKKRNVEQSYLRDENEGREEGLLEADYKEARIPPYFSIGCTEVGDKERSPYFKQILAVRVSLEPIDLLGINLAVAILKSTGTDGEDVISNLRNGVAAENALAIMQERGFSNPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTILDVAERIQKSGLRDLTTSKTPEASIAAALSRDTKLFERTALQHIVWAPYRKDPADAEAILSEAREKIQVFKNGYFEGDDVEREDVERDEDSESDVAEDLEVDDLGTELKPDKEALSCEGNTFQGKIGLGNGKETLQDGIDNMSSGLTSMDSEGLKEVKVTGASGGRSIDFVGVHNEVTNADQESSVIDESNCGEPWVHALTEGEYSDLSVEERLSALVALIGVANEGNSIRVVLEERLEAANALKKQIWAEAQVDKRRMKEEGQKSPFAGDDKMIYPLAIHRMIQAGYAAAEKSRSQLKAFIGHKAEEMYVYRSLPLGQDRRRNRYWQFITSSSRNDPGSGRIFVELRDGHWRLIDSEESFDAILASLDVRGVRESNLLSMLQRIEVSFKETVRKNRTVKTEISEMAPPNSNCSAASIIDSPNSTVCDMTESSSSFAIGLGRNEKEKNGASKRYQEFEKWIWDECFNASILCALKYGKTRSECKEKNGEADWTSHNVGSSLPPRIRLLKAQLAMIEVSVLVGALQPAWSDDFRETWAVKLHNASSAEDLLQILTMLESAVKRDFLSLNFETTTELLGSSNPKIANRSSIAETVSVLPWLPQTTSSVALRLMELDSSIFYTLEQKEESQKDKGGLDLMAIPTKHTVVKNVPDYQLAEAPREPGYQHQDPWTDPGSGPTSSGRGRGRGRGRGGRPRGGRPQKQVIGSRSESGPQSTTTNNERLGQLVGWKGRARGRGGRKRGRRTTRSRQKPVKRVTDITGERENARVTTAFDTSSVQPDWNMEETTTPVRAESAENVSSSDRSEYDDDDTIGPPIGDEYDDLMAAGGSYSGVFGSNKPEYLMEGGVDYGDEDDDYVNDDEEDDVEGEDFEEDEQGNVDVEGYFNGDSDEEEMRDISRGVQIGNPDEVTESSSSEYSD

Gene family

Gene family	subfamily
Transcription Factors Family	DDT

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0006355	biological_process	regulation of transcription, DNA-templated

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.608
	SRR3591706	second leaf	20.684
	SRR3591707	mature leaf	38.212
	SRR3591708	Shoot apex	24.953
	SRR3591709	Stem	41.877
	SRR3591710	White floral bud	21.834
	SRR3591711	White flower	22.941
	SRR3591712	Green floral bud	18.247
	SRR3591713	Yellow flower	15.912
SRP173429	SRR8316895	Juvenile bud stage	9.484
	SRR8316896	Juvenile bud stage	13.169
	SRR8316897	Juvenile bud stage	3.260
	SRR8316894	Third green stage	6.603
	SRR8316900	Third green stage	13.503
	SRR8316901	Third green stage	14.436
	SRR8316898	Complete white stage	3.285
	SRR8316899	Complete white stage	13.942
	SRR8316903	Complete white stage	11.675
	SRR8316902	Silver flowering stage	5.977
	SRR8316904	Silver flowering stage	10.306
	SRR8316905	Silver flowering stage	4.912
	SRR8316906	Gold flowering stage	16.117
	SRR8316907	Gold flowering stage	15.277
	SRR8316908	Gold flowering stage	10.845
SRP132670	SRR6706286	Control	22.279
	SRR6706287	Light intensity 50%	22.281
	SRR6706288	Light intensity 20%	23.112
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.763
	CNS0095593	Slightly white alabastrum(diploid) 2	9.278
	CNS0095594	Slightly white alabastrum(diploid) 3	10.771
	CNS0095595	Whole white alabastrum(diploid) 2	9.508
	CNS0095596	Whole white alabastrum(diploid) 3	6.522
	CNS0095597	Whole white alabastrum(diploid) 4	9.516
	CNS0095598	Silvery flower (diploied) 1	18.970
	CNS0095599	Silvery flower (diploied) 2	13.635
	CNS0095600	Silvery flower (diploied) 3	19.805
	CNS0095601	Golden flower (diploid) 1	15.540
	CNS0095602	Golden flower (diploid) 2	23.152
	CNS0095603	Golden flower (diploid) 3	21.269
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.758
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.047
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.141
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.057
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.359
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.894
	CNS0095610	Silvery flower (tetraploid) 1	10.746
	CNS0095611	Silvery flower (tetraploid) 2	8.514
	CNS0095612	Silvery flower (tetraploid) 3	7.411
	CNS0095613	Golden flower (tetraploid) 1	6.205
	CNS0095614	Golden flower (tetraploid) 2	10.008
	CNS0095615	Golden flower (tetraploid) 3	8.319
CRA001975	CRR073297	Stem 1	19.303
	CRR073298	Stem 2	18.816
	CRR073299	Stem 3	10.696
	CRR073300	Leaf 1	20.875
	CRR073301	Leaf 2	19.014
	CRR073302	Leaf 3	9.856
	CRR073303	Juvenile bud 1	13.417
	CRR073304	Juvenile bud 2	6.062
	CRR073305	Juvenile bud 3	21.554
	CRR073306	Third green 1	7.429
	CRR073307	Third green 2	4.665
	CRR073308	Third green 3	7.753
	CRR073309	Second white 1	3.481
	CRR073310	Second white 2	6.167
	CRR073311	Second white 3	6.744
	CRR073312	Silver flowering 1	5.163
	CRR073313	Silver flowering 2	4.325
	CRR073314	Silver flowering 3	4.251
	CRR073315	Gold flowering 1	5.893
	CRR073316	Gold flowering 2	10.109
	CRR073317	Gold flowering 3	4.280
	CRR073318	Tawny withering 1	14.456
	CRR073319	Tawny withering 2	12.418
	CRR073320	Tawny withering 3	10.160