Gene detail

Detail information of GWHGAAZE002104

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010093960.1	0	Receptor-like protein kinase HSL1 [Morus notabilis]
COG	YP_004775215.1	3E-33	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	0	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|W9QUZ1\|W9QUZ1_9ROSA	0	Receptor-like protein kinase HSL1 {ECO:0000313\|EMBL:EXB54947.1}
TAIR10	AT1G28440.1	6E-149	HAESA-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	69320695	69323608	+
GWHAAZE00000001	mRNA	69320695	69323608	+
GWHAAZE00000001	exon	69320695	69321438	+
GWHAAZE00000001	exon	69321566	69322323	+
GWHAAZE00000001	exon	69323299	69323608	+
GWHAAZE00000001	CDS	69320695	69321438	+
GWHAAZE00000001	CDS	69321566	69322323	+
GWHAAZE00000001	CDS	69323299	69323608	+

Transcript Sequence
>GWHTAAZE002108 ATGAGTCAACTCACTAACCTGGACGTATCGCAGAATAAACTCACCGGTTCAATACCAAATTTAATCTTTCAGTTCTCCAATGCCGTACAGATTCTACTGTACAACAACTCATTCACTAGCGAGTTACCGGTAAATGGGTGGACGAATCTGACGGCGTTGATTAACTTCGATGCTTCAATGAACATGTTGACAGGGACAATTCCAACCGAATTATGCGAGTTGAAATTCGGGTCGCTGAATTTGTTTGAAAACCAGCTGGAGGGTGTTATACCAGAGAGTATAGCTAAATCCCCGAATTTATACGAACTCAAATTGTTCAATAATCGGCTTATCGGATCTTTACCGAGTGATTTAGGGATGAATTCGCCGTTAAAAACGATTGATGTGTCGGGAAATCCTCTGTCCGGTAGGATTCCCGCAAATTTGTGCAAAAAAGGTGTGCTGGAAGAACTGATTCTCATCTACTCTTCATTTTCCGGCGATATTCCGGCCACACTTGGTGCTTGCTGGAGCTTGACCCGAGTCCGGATGAGGAGTAATAGGCTCTGGGGGGAAGTTCCGGCAGGGCTTTGGGGTTTGCCGAATATTAATCTTCTTGATCTGCGTGAGAATTCATTTTCCGGGAAAATCTCGGATAGGATTTCTGGTGCATTTAACCTCTCAACACTATTGATTTCTCAGAATCAGTTTTCTGGGTCACTGCCAAATGAAATTGGGTCTTTAGGAAACTTGATTGAATTTTCTCTCAATGAGCTTAATTTAGCAAACAATATGCTATCCGGGAAAATCCCAGATGAAATTGGGGATTTGCTTGTGCTTAATTACCTTGATCTTTCTCAGAATCATTTGTCTGGGAATATCCCAATTGGGTTGCAGAATTTGAAGCTTAATAAGCTAAATCTGTCGAGTAACCATCTTACGGGGGAAATTCCCCCTCTCTATGCTAAGTCTTCTTACAAGAATAGCTTTGTCGGTAATCCAGGCTTGTGTGGTGATCCTTCTGATCTTTGCCCCGAAAAGGGCAGACTTAAGCATCATGTTTATTTGTGGATACTTCGATCAATTTATATAATTGCTGCCCTAATTTTCGTTGTTGGCGTGGTTTGGTTCTTGTTAAAGTATCAAAAATTCAAGAACACAGAGAAAGGACCAGCCACGTGGAAATGGAGATCATTTCACAAGTTAGGTTTTGGCGAATTCGAAATTCTAGACTCTCTAAGCGAAGATAATTTCATCGGAAGTGGTGGTTCTGGTAAAGTCTATAAAGTTGTTCTTAGTAATGGCGAGGTAGTAGCAGTAAAGAAGATGAAAGACGAAACCCGTGTTATTGATTCATTCGAAACTGAAGTCGATACACTTGGAAAGATTAGGCACAAGAATATAATGAGATTATGGTGTTGTTGCAACAATGGGGATTATAAGCTTTTGGTGTATGAGTACATGCAAAATGGGAGTTTAGCGGACTTGTTGCATGGTAGCAAGAGGAGCAGTGGTTTGTTGGAGCCACCGGTGGACCAATTTTTTGGGGAGAAAGACTTGGCTACATGGGTGTGCACCACCTTGGACCGGGAAGGTTTTGACCGCGTGCTCGACCCTACCCTCGATTCAACTTACAAGGACCAAATCTCCAAGGTTCTCGACATTGGTTTACGTTGCATTAGACCACTGCCTATTAACCGTCCTTCGATGAAAAGGGTGGTCAAAATGCTGCAAGATGTAGGGGCAGATAATAAGCCCAAGGTTCCAAAGAAAGATGGCAAGCTCTCACCTTATTACTATGATGAAGATGGCTCTAGTCAAGTAGTACTGTAG

Network for GWHGAAZE002104

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.34	LRR_1	124	143	0.92
PF00069.26	Pkinase	408	494	2.50E-15

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.173
	SRR3591706	second leaf	2.001
	SRR3591707	mature leaf	3.164
	SRR3591708	Shoot apex	1.518
	SRR3591709	Stem	0.547
	SRR3591710	White floral bud	0.533
	SRR3591711	White flower	0.602
	SRR3591712	Green floral bud	0.515
	SRR3591713	Yellow flower	0.157
SRP173429	SRR8316895	Juvenile bud stage	0.581
	SRR8316896	Juvenile bud stage	0.478
	SRR8316897	Juvenile bud stage	0.087
	SRR8316894	Third green stage	0.220
	SRR8316900	Third green stage	0.479
	SRR8316901	Third green stage	0.404
	SRR8316898	Complete white stage	0.137
	SRR8316899	Complete white stage	0.892
	SRR8316903	Complete white stage	0.438
	SRR8316902	Silver flowering stage	0.073
	SRR8316904	Silver flowering stage	0.433
	SRR8316905	Silver flowering stage	0.001
	SRR8316906	Gold flowering stage	0.100
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.193
SRP132670	SRR6706286	Control	0.294
	SRR6706287	Light intensity 50%	0.290
	SRR6706288	Light intensity 20%	0.354
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.308
	CNS0095593	Slightly white alabastrum(diploid) 2	0.177
	CNS0095594	Slightly white alabastrum(diploid) 3	0.159
	CNS0095595	Whole white alabastrum(diploid) 2	0.429
	CNS0095596	Whole white alabastrum(diploid) 3	0.006
	CNS0095597	Whole white alabastrum(diploid) 4	0.409
	CNS0095598	Silvery flower (diploied) 1	0.773
	CNS0095599	Silvery flower (diploied) 2	0.607
	CNS0095600	Silvery flower (diploied) 3	0.609
	CNS0095601	Golden flower (diploid) 1	0.788
	CNS0095602	Golden flower (diploid) 2	1.068
	CNS0095603	Golden flower (diploid) 3	0.976
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.230
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.055
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.586
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.012
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.033
	CNS0095610	Silvery flower (tetraploid) 1	0.110
	CNS0095611	Silvery flower (tetraploid) 2	0.200
	CNS0095612	Silvery flower (tetraploid) 3	0.047
	CNS0095613	Golden flower (tetraploid) 1	0.053
	CNS0095614	Golden flower (tetraploid) 2	0.223
	CNS0095615	Golden flower (tetraploid) 3	0.139
CRA001975	CRR073297	Stem 1	1.104
	CRR073298	Stem 2	0.661
	CRR073299	Stem 3	0.344
	CRR073300	Leaf 1	0.865
	CRR073301	Leaf 2	0.649
	CRR073302	Leaf 3	0.690
	CRR073303	Juvenile bud 1	0.312
	CRR073304	Juvenile bud 2	0.327
	CRR073305	Juvenile bud 3	0.225
	CRR073306	Third green 1	0.296
	CRR073307	Third green 2	0.029
	CRR073308	Third green 3	0.247
	CRR073309	Second white 1	0.112
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.015
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.015
	CRR073314	Silver flowering 3	0.022
	CRR073315	Gold flowering 1	1.023
	CRR073316	Gold flowering 2	1.953
	CRR073317	Gold flowering 3	0.582
	CRR073318	Tawny withering 1	0.487
	CRR073319	Tawny withering 2	0.589
	CRR073320	Tawny withering 3	0.257