Gene detail

Detail information of GWHGAAZE002144

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278211.1	2.8073E-157	PREDICTED: trans-resveratrol di-O-methyltransferase [Vitis vinifera]
COG	YP_007063273.1	9E-30	hydroxyneurosporene-O-methyltransferase
Swissprot	tr\|B6VJS4\|ROMT_VITVI	7E-142	Trans-resveratrol di-O-methyltransferase
trEMBL	tr\|F6H5H6\|F6H5H6_VITVI	1E-157	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47328.1}
TAIR10	AT4G35160.1	2E-44	O-methyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	71072772	71081807	-
GWHAAZE00000001	mRNA	71072772	71081807	-
GWHAAZE00000001	exon	71072772	71073086	-
GWHAAZE00000001	exon	71081118	71081807	-
GWHAAZE00000001	five_prime_UTR	71081802	71081807	-
GWHAAZE00000001	CDS	71081118	71081801	-
GWHAAZE00000001	CDS	71072772	71073086	-

Transcript Sequence
>GWHTAAZE002148 AATTCAATGTCCCTCAATTGTGCTATCAATCTAGGCATACCGGATGCCATCAACAACCATGGCCGTCCAATGACACTCTCGGATCTCATCGACGCTCTTCCAATCAACAAGAAGAAATCTTACGGTATCTACCGCCTCATGCGCATGTTAGTCCACTCGGGTTACTTCGTCGAAAAAGAAACCCCCGGAAATAGACAAGAACTAGGGTATTGGCTTACCCCAGCTTCACGGCTGGTGCTAAGGGATGAGCCGTTGAGCATTACACCATTTTTACAATTAGTACTGGATCCAGTCATTAAAAAACCTTGGGATTATATGAGTGAGTGGTTCCAAAATGAGGAGCGCACACCGTTCGAGATGGCCCACGGGATGACCATGTGGGAGTTCGCGGGCCATGAGTCAAAATTTAATAATCTGTTTAATGAAGCGATGGCTAGCGATGCGAGATTGATTGCGAGCGTGATGGTTAAGGATTGTGGTGCAGTTTTCGAGGGGTTGGAGTCAATCGTGGATGTGGGTGGTGGGACTGGGATGGTGGCAAAGGCGGTGGCTGGAGCGTACCCGGAGTTGAAGTGCACGGTGCTTGATCTTCCACAAGTGGTGGGGGATTTGGTTGGGAGTGAAAATTTGAAGTTTGTTGGTGGGGATATGTTTGAGGCTATTCCTCCTGCAAATGCCGTTTTACTCAAGTCAATACTACATGATTGGAATGATGAAGAGTGTGTGAAAATACTGAAGTTAAGCAAAGAGGCAATTCCAAGCAAAGAGGAGGGTGGAAAGGTGATTATCATAGACATGGTGGTCAATAATTGTAATAACCAAAAGAAAGATGATAATTCAATGGAAACACAACTCTTCTTTGATATAGCGATGATGGTTTTGTTTACTGGGAAAGAGAGGACTGAGAAAGAATGGGCAAAGCTCTTTGAGGCTGCTGCCTTCAATGGTGGCTTTAAGATTACTCATATTCTTGGTTTGAGATCTGTCATTGAGGTTTTCCCATAA

Network for GWHGAAZE002144

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08100.12	Dimerisation	1	49	5.50E-15
PF00891.19	Methyltransf_2	101	312	6.30E-56
PF18052.2	Rx_N	13	94	1.10E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16040	ROMT	Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945

Gene Ontology

GO term	Ontology	Name
GO:0008168	molecular_function	methyltransferase activity
GO:0046983	molecular_function	protein dimerization activity
GO:0008171	molecular_function	O-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.387
	SRR3591707	mature leaf	0.078
	SRR3591708	Shoot apex	0.299
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.932
	SRR3591711	White flower	0.790
	SRR3591712	Green floral bud	0.054
	SRR3591713	Yellow flower	4.139
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.018
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.166
	SRR8316901	Third green stage	0.035
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.793
	SRR6706287	Light intensity 50%	0.803
	SRR6706288	Light intensity 20%	0.912
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.042
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.108
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.053
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.611
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.025
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.478
	CNS0095614	Golden flower (tetraploid) 2	0.183
	CNS0095615	Golden flower (tetraploid) 3	0.035
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.007
	CRR073302	Leaf 3	0.078
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.134
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.056
	CRR073307	Third green 2	0.523
	CRR073308	Third green 3	0.190
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000