Gene detail

Detail information of GWHGAAZE002147

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI21924.3	2.36551E-53	unnamed protein product [Vitis vinifera]
COG	YP_006433319.1	5E-13	methylase involved in ubiquinone/menaquinone biosynthesis
Swissprot	tr\|B6VJS4\|ROMT_VITVI	1E-46	Trans-resveratrol di-O-methyltransferase
trEMBL	tr\|A0A068VLH5\|A0A068VLH5_COFCA	1E-51	Coffea canephora DH200=94 genomic scaffold, scaffold_4795 {ECO:0000313\|EMBL:CDP21551.1}
TAIR10	AT1G51990.1	1E-17	O-methyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	71163083	71164902	+
GWHAAZE00000001	mRNA	71163083	71164902	+
GWHAAZE00000001	exon	71163083	71163770	+
GWHAAZE00000001	exon	71164588	71164902	+
GWHAAZE00000001	five_prime_UTR	71163083	71163728	+
GWHAAZE00000001	CDS	71163729	71163770	+
GWHAAZE00000001	CDS	71164588	71164902	+

Transcript Sequence
>GWHTAAZE002151 AACACAATGTCCCTCAATTGTGCTATCAAACTAGGCATACCGGATGCCATCAACAACCACGGCCATCCGATGACACTCTCGGACCTCATCGACACTCTCTCGATCAACAAAAAGAAATCCGACGGTATCCACCGCCTCATGCGCATGTTAGTCCACTCCGGGTTCTTTGTTGAAAAAGATACCCCAGAAAACGGAAAAGAAGTGGGGTACTGGCTTACACCAGCTTCACGATTGTTCCTAAAGGACGAACCATTATGCCTTACACCGTTTTTACAACTTATGTTGGACCCAGTTATTAAAAAACCGTGGCACTATATGAGTGAGTGGTTCCAAAATGAGGATCGCACGCCGTTTGAGACCGCCCATGGGATGACCATTTGGGAGTATGCGGGCAACAGGTCAAAATTTAATAATTTGTTCAATGTTGCGATGGCTAGTGATGCAAGGTTGATAGCAAGCGTCGTTGTTAAGGATTGTGGTGTGATTTTCGAGGGTTTGGAGTCTGTTGTAGATGTTGGTGGTGGGACCGGAACGTCGATGAGGGCTGACCGCGGCGTTCCCGCAGTTGAAGTGCACGGTGCTTGATCTTCCACAAGTGGTGGGGGATTTGGTCGGGAGTGAAAATTTGAGGTTTGTTGGTGGGGATATGTTTCAGGCTATTCCTCCTGCAAATGCTGTTTTACTCGAGTGGATATTACATGATTGGAATGATGAAGAATGTGTGAAAATACTAAAGCTAAGCAAAGAGGCAATTCCAAGCAAAGAGGAGGGTGGAAAGGTAATTATCATAGACATGGTGGTCAATTATAGTAATAACCAGAAGAAAGACGATAACTCAATAGAAACACAACTCTTCTTTGATATGTTGATGATGGTTTCACTGAATGGGAAAGAGAGGAATGAGAAAGAATGGGCAAAGCTCTTCAAGGCTGCTGGCTTCAATGGTGGTTTTATGATTACTCCTATTCTTGGATTGAGATCTATCATTGAGGTTTTCCCATAA

Network for GWHGAAZE002147

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00891.19	Methyltransf_2	1	99	1.20E-26
PF00201.19	UDPGT	238	404	3.00E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K23260	TOGT1	Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940
		Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945

Gene Ontology

GO term	Ontology	Name
GO:0016758	molecular_function	transferase activity, transferring hexosyl groups
GO:0008168	molecular_function	methyltransferase activity
GO:0008171	molecular_function	O-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.286
	SRR3591706	second leaf	17.616
	SRR3591707	mature leaf	2.124
	SRR3591708	Shoot apex	12.968
	SRR3591709	Stem	7.795
	SRR3591710	White floral bud	2.224
	SRR3591711	White flower	1.767
	SRR3591712	Green floral bud	4.552
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.552
	SRR8316896	Juvenile bud stage	2.915
	SRR8316897	Juvenile bud stage	3.456
	SRR8316894	Third green stage	2.164
	SRR8316900	Third green stage	4.343
	SRR8316901	Third green stage	3.878
	SRR8316898	Complete white stage	1.345
	SRR8316899	Complete white stage	9.370
	SRR8316903	Complete white stage	1.319
	SRR8316902	Silver flowering stage	0.341
	SRR8316904	Silver flowering stage	0.572
	SRR8316905	Silver flowering stage	0.065
	SRR8316906	Gold flowering stage	0.009
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.148
SRP132670	SRR6706286	Control	3.285
	SRR6706287	Light intensity 50%	1.794
	SRR6706288	Light intensity 20%	1.981
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.497
	CNS0095593	Slightly white alabastrum(diploid) 2	2.026
	CNS0095594	Slightly white alabastrum(diploid) 3	0.818
	CNS0095595	Whole white alabastrum(diploid) 2	0.943
	CNS0095596	Whole white alabastrum(diploid) 3	0.058
	CNS0095597	Whole white alabastrum(diploid) 4	0.544
	CNS0095598	Silvery flower (diploied) 1	2.527
	CNS0095599	Silvery flower (diploied) 2	1.287
	CNS0095600	Silvery flower (diploied) 3	0.758
	CNS0095601	Golden flower (diploid) 1	0.564
	CNS0095602	Golden flower (diploid) 2	0.429
	CNS0095603	Golden flower (diploid) 3	0.393
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.919
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.811
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.252
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.936
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.218
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.148
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.041
	CNS0095612	Silvery flower (tetraploid) 3	0.068
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.053
	CRR073298	Stem 2	1.560
	CRR073299	Stem 3	2.587
	CRR073300	Leaf 1	4.216
	CRR073301	Leaf 2	8.257
	CRR073302	Leaf 3	1.928
	CRR073303	Juvenile bud 1	0.677
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	2.363
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.077
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.030
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.421
	CRR073316	Gold flowering 2	1.952
	CRR073317	Gold flowering 3	0.368
	CRR073318	Tawny withering 1	0.233
	CRR073319	Tawny withering 2	0.562
	CRR073320	Tawny withering 3	0.696