Detail information of GWHGAAZE002151


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001233796.11.08473E-38ethylene response factor 2 [Solanum lycopersicum]
Swissprottr|Q9LW49|ERF4_NICSY3E-35Ethylene-responsive transcription factor 4
trEMBLtr|Q84LQ6|Q84LQ6_SOLLC4E-39Ethylene response factor 3 {ECO:0000313|EMBL:AAS72388.1}
TAIR10AT3G15210.13E-20ethylene responsive element binding factor 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7121444071215072+
GWHAAZE00000001mRNA7121444071215072+
GWHAAZE00000001exon7121444071214715+
GWHAAZE00000001exon7121484871215072+
GWHAAZE00000001CDS7121444071214715+
GWHAAZE00000001CDS7121484871215072+
Transcript Sequence

Network for GWHGAAZE002151

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00847.21AP219641.80E-14
PF00180.21Iso_dh74023.60E-93
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAP2/ERF-ERF

KEGG pathway

KO Enzyme pathway mapID
K00031IDH1, IDH2, icd Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cyclemap00020
Carbon fixation pathways in prokaryotesmap00720
Glutathione metabolismmap00480
Peroxisomemap04146

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0006102biological_processisocitrate metabolic process
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0004450molecular_functionisocitrate dehydrogenase (NADP+) activity
GO:0000287molecular_functionmagnesium ion binding
GO:0051287molecular_functionNAD binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functionDNA-binding transcription factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf111.670
SRR3591706second leaf10.275
SRR3591707mature leaf10.886
SRR3591708Shoot apex72.922
SRR3591709Stem146.210
SRR3591710White floral bud78.673
SRR3591711White flower102.317
SRR3591712Green floral bud33.421
SRR3591713Yellow flower74.556
SRP173429 SRR8316895Juvenile bud stage 112.414
SRR8316896Juvenile bud stage 48.521
SRR8316897Juvenile bud stage 51.962
SRR8316894Third green stage 29.308
SRR8316900Third green stage 45.411
SRR8316901Third green stage 71.705
SRR8316898Complete white stage 9.975
SRR8316899Complete white stage 155.637
SRR8316903Complete white stage 11.547
SRR8316902Silver flowering stage19.984
SRR8316904Silver flowering stage11.243
SRR8316905Silver flowering stage10.923
SRR8316906Gold flowering stage 56.941
SRR8316907Gold flowering stage 45.635
SRR8316908Gold flowering stage 52.556
SRP132670SRR6706286Control12.120
SRR6706287Light intensity 50%13.449
SRR6706288Light intensity 20%7.105
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1121.101
CNS0095593Slightly white alabastrum(diploid) 2166.060
CNS0095594Slightly white alabastrum(diploid) 3150.157
CNS0095595Whole white alabastrum(diploid) 277.054
CNS0095596Whole white alabastrum(diploid) 312.845
CNS0095597Whole white alabastrum(diploid) 472.025
CNS0095598Silvery flower (diploied) 1311.060
CNS0095599Silvery flower (diploied) 2234.856
CNS0095600Silvery flower (diploied) 397.457
CNS0095601Golden flower (diploid) 1288.075
CNS0095602Golden flower (diploid) 2171.615
CNS0095603Golden flower (diploid) 3169.682
CNS0095604Slightly white alabastrum(tetraploid) 12.669
CNS0095605Slightly white alabastrum(tetraploid) 22.314
CNS0095606Slightly white alabastrum(tetraploid) 35.030
CNS0095607Whole white alabastrum(tetraploid) 11.476
CNS0095608Whole white alabastrum(tetraploid) 23.604
CNS0095609Whole white alabastrum(tetraploid) 31.756
CNS0095610Silvery flower (tetraploid) 121.388
CNS0095611Silvery flower (tetraploid) 25.088
CNS0095612Silvery flower (tetraploid) 347.714
CNS0095613Golden flower (tetraploid) 122.339
CNS0095614Golden flower (tetraploid) 224.543
CNS0095615Golden flower (tetraploid) 318.228
CRA001975CRR073297Stem 144.276
CRR073298Stem 255.756
CRR073299Stem 385.743
CRR073300Leaf 1125.101
CRR073301Leaf 2170.167
CRR073302Leaf 3120.752
CRR073303Juvenile bud 1121.415
CRR073304Juvenile bud 2169.239
CRR073305Juvenile bud 3198.015
CRR073306Third green 1102.578
CRR073307Third green 2119.128
CRR073308Third green 392.474
CRR073309Second white 188.448
CRR073310Second white 297.371
CRR073311Second white 351.289
CRR073312Silver flowering 1103.660
CRR073313Silver flowering 2131.910
CRR073314Silver flowering 378.818
CRR073315Gold flowering 129.550
CRR073316Gold flowering 235.297
CRR073317Gold flowering 335.496
CRR073318Tawny withering 174.448
CRR073319Tawny withering 2167.358
CRR073320Tawny withering 3146.665