Gene detail

Detail information of GWHGAAZE002160

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN82114.1	2.5499E-153	hypothetical protein VITISV_031339 [Vitis vinifera]
Swissprot	tr\|Q9SD53\|Y3720_ARATH	3E-48	UPF0481 protein At3g47200
trEMBL	tr\|A5AFY5\|A5AFY5_VITVI	1E-153	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN82114.1}
TAIR10	AT3G50150.1	1E-64	Plant protein of unknown function (DUF247)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	71366623	71370021	+
GWHAAZE00000001	mRNA	71366623	71370021	+
GWHAAZE00000001	exon	71366623	71366766	+
GWHAAZE00000001	exon	71367830	71369014	+
GWHAAZE00000001	exon	71369305	71370021	+
GWHAAZE00000001	CDS	71366623	71366766	+
GWHAAZE00000001	CDS	71367830	71369014	+
GWHAAZE00000001	CDS	71369305	71370021	+

Transcript Sequence
>GWHTAAZE002164 ATGCCCTTGGGAATTATGGCATGCCTTACAACTAACATTGCTCATTTGACTAGTATTAAGATCCCCATTTGCGCCACCATTGGTGCTGGTAATAGCACTAAGGGCAATGCTGCCAATGGTACGACTATTCCCCCTACAACCGAGGACATTACATTTTTCGAAGATTTGTTTAGGGCTTTTGGGGAAAGGGACACGCTTTACACGAGACAACCAGAAAAACACTTTCACTTCCTAGACGGGACTAGGAAGAGTATGCTTTGGGACCCTACCTACGGAGTTTTACTTTCAGTAAGTGATCTTGATGTAGAAAGATATATTGGTGATCAGGATATCTTTCGATCTGCTACACAACTTAGTGAAGCAGGAATCCGTTTCAGACGGCTTTCTAGTGCAGGCCTTATAGGCTTTCGTGATGGGGCGCTCTTTCTCACTCCCCTTACGGTGGACAATACAACAGAAACAATGTTCTTAAACCTGATAGCATTGGAGCAGTATCAAGTAGAGACTACTGGGGGAACGAACGAGGTGAATTCGTACATTTTCTTCATGAACAGCATCATTTATGATGCTAGAGACGTGAGTCTGCTATGTTCTCGTGGTATTATAAAGAACCGAATGGGGAACGATGAGGCTGTTGTTAAACTATTCAAATCGATAGCAAAAGGCACAACACTTGATCCAAAAACCAAGGCCGGCAAGGTCTATTGTTTGGTTGCCAAATATTATCTGTCAAGAAGGATAGATTTTAATCGAATGCATTCGGTGAGTGATGTATTGAATAACCTCCGTGAAATGCCAACTACAACAGTGCATACGCCAACAGAGATGGAGGAATGGGAGAGAAGTTCCATCTACAAAGTGGCACCTCATGTTACTGAGGTAAACAATAAAGCTTACAAGCCACATGTAGTCTCCTTTGGGCCTCACCATCATGGTGAGGAACACTTAAGACCTATGGAGGAGCACAAGCGCCGAGCTCTCTCTCACTTCCTTAGGAGATCTAACAAAACTCTCGAGTCTTACTCTGATCCTCTGTTGGGTGTTATGGAAGTTCTGATGGATTCATACAAACCCCTTGATCCTATATGGATACAAAATATCTATGGTTTCTTGCATATGATAATTCTTGATAGCTGTTTCATGCTCGAAATATTGCGCGCGGGCACTGGTGCCGTGAATGACTATGCCCCTAATGATCCCATCTTCAGCAATCACGGAAAAGTATATATCATGCCATTCTTCAAGCACGATATGCTCTTGCTTGAAAACCAATTGCCTCTTTTTGTTCTCTATATACTACTTGCTGTTGAAAAGGACATGGTAATTGAGGCTGATTTTGTCAACAAGCTTATACTTGAGTTCTACGGGGTCCCCTACACGCGATCAGCGAGCATAGGAAAATGCTTGCATATACTAGATGTGTATAGGAAGAGTATGGTTTGGGAAGATTCTCAAAGAAGTAGGCCCGAGGCACAAGGATATATTAAACCTATTCAAGAGGAGCAGATCATTCCATCTGCGACACGTCTTAGTGAAGCAGGAATCCTATTCAAGAGGAGCAGATCTGAAAACCTTACAGACATGTCCTTTCATCGCGGGGCACTCAATCTCCCTCTTGTTGTGGTGGACGATACAACGGAATCGATGTTCTTAAACCAGATAGCATTTGAGCGGTATCACGTAGGGGCCGGGGACAAGGTGAGCTCGTACATTTTCTTCATGAACAGCATCATTTACAATGCCAAAGACGTTAGTCTACTACGCTCGCATGGTATCATTCGCAACGCACTGGGGAACGAAGAGGCTGTCGTTAAACTATTCAAGTTACTAGCAAAAGACATCACGCTTGATCCAAAAAATATGGTCCACGACATCCACAGAAAGGTCAAGACGTATTGCAAGAAGCCTTGGCTCCTGTTGCGCGCCACAATCTTCCGCATCTACTTTAAGAGTCCTTGGCGTATTCTGTTCGCAGCAATCTTGCTCTTCGTGTTTAGTATAATTCAAACGGTTTACACCGTTTATGGCGTTTATTACAAAAATTAA

Network for GWHGAAZE002160

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03140.16	DUF247	54	246	6.90E-36
PF03140.16	DUF247	284	664	1.00E-92

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14320	AAAS	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.135
	SRR3591706	second leaf	0.179
	SRR3591707	mature leaf	0.041
	SRR3591708	Shoot apex	0.175
	SRR3591709	Stem	0.280
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.106
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.585
	SRR8316896	Juvenile bud stage	1.995
	SRR8316897	Juvenile bud stage	0.919
	SRR8316894	Third green stage	0.611
	SRR8316900	Third green stage	0.673
	SRR8316901	Third green stage	1.265
	SRR8316898	Complete white stage	0.117
	SRR8316899	Complete white stage	0.267
	SRR8316903	Complete white stage	0.048
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.129
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.072
	SRR8316907	Gold flowering stage	0.197
	SRR8316908	Gold flowering stage	0.211
SRP132670	SRR6706286	Control	0.249
	SRR6706287	Light intensity 50%	0.532
	SRR6706288	Light intensity 20%	0.313
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.369
	CNS0095593	Slightly white alabastrum(diploid) 2	4.921
	CNS0095594	Slightly white alabastrum(diploid) 3	2.681
	CNS0095595	Whole white alabastrum(diploid) 2	0.941
	CNS0095596	Whole white alabastrum(diploid) 3	1.169
	CNS0095597	Whole white alabastrum(diploid) 4	0.334
	CNS0095598	Silvery flower (diploied) 1	0.035
	CNS0095599	Silvery flower (diploied) 2	0.131
	CNS0095600	Silvery flower (diploied) 3	0.102
	CNS0095601	Golden flower (diploid) 1	0.125
	CNS0095602	Golden flower (diploid) 2	0.144
	CNS0095603	Golden flower (diploid) 3	0.060
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.501
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.417
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.675
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.705
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.342
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.295
	CNS0095610	Silvery flower (tetraploid) 1	0.030
	CNS0095611	Silvery flower (tetraploid) 2	0.075
	CNS0095612	Silvery flower (tetraploid) 3	0.117
	CNS0095613	Golden flower (tetraploid) 1	0.037
	CNS0095614	Golden flower (tetraploid) 2	0.075
	CNS0095615	Golden flower (tetraploid) 3	0.051
CRA001975	CRR073297	Stem 1	1.057
	CRR073298	Stem 2	1.032
	CRR073299	Stem 3	0.357
	CRR073300	Leaf 1	0.954
	CRR073301	Leaf 2	1.766
	CRR073302	Leaf 3	0.413
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.030
	CRR073305	Juvenile bud 3	0.074
	CRR073306	Third green 1	0.135
	CRR073307	Third green 2	0.078
	CRR073308	Third green 3	0.017
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.311
	CRR073317	Gold flowering 3	0.089
	CRR073318	Tawny withering 1	1.727
	CRR073319	Tawny withering 2	1.656
	CRR073320	Tawny withering 3	1.100