Detail information of GWHGAAZE002162


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP14812.10unnamed protein product [Coffea canephora]
Swissprottr|Q9C919|ATL19_ARATH0.000002Putative RING-H2 finger protein ATL19
trEMBLtr|A0A068V2N0|A0A068V2N0_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_91 {ECO:0000313|EMBL:CDP14812.1}
TAIR10AT4G28370.10RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7137566471396902-
GWHAAZE00000001mRNA7137566471396902-
GWHAAZE00000001exon7137566471375924-
GWHAAZE00000001exon7137682771376976-
GWHAAZE00000001exon7137797271378088-
GWHAAZE00000001exon7137962771379955-
GWHAAZE00000001exon7138047171380638-
GWHAAZE00000001exon7138162171381714-
GWHAAZE00000001exon7138233471382491-
GWHAAZE00000001exon7138453371384610-
GWHAAZE00000001exon7138469471384760-
GWHAAZE00000001exon7138688271386942-
GWHAAZE00000001exon7138830771388422-
GWHAAZE00000001exon7139212671392253-
GWHAAZE00000001exon7139331371393385-
GWHAAZE00000001exon7139678371396902-
GWHAAZE00000001CDS7139678371396902-
GWHAAZE00000001CDS7139331371393385-
GWHAAZE00000001CDS7139212671392253-
GWHAAZE00000001CDS7138830771388422-
GWHAAZE00000001CDS7138688271386942-
GWHAAZE00000001CDS7138469471384760-
GWHAAZE00000001CDS7138453371384610-
GWHAAZE00000001CDS7138233471382491-
GWHAAZE00000001CDS7138162171381714-
GWHAAZE00000001CDS7138047171380638-
GWHAAZE00000001CDS7137962771379955-
GWHAAZE00000001CDS7137797271378088-
GWHAAZE00000001CDS7137687571376976-
GWHAAZE00000001three_prime_UTR7137682771376874-
GWHAAZE00000001three_prime_UTR7137566471375924-
Transcript Sequence

Network for GWHGAAZE002162

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0190


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_24855304.40E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf39.113
SRR3591706second leaf18.163
SRR3591707mature leaf17.053
SRR3591708Shoot apex18.769
SRR3591709Stem96.591
SRR3591710White floral bud37.182
SRR3591711White flower40.643
SRR3591712Green floral bud19.007
SRR3591713Yellow flower42.092
SRP173429 SRR8316895Juvenile bud stage 15.567
SRR8316896Juvenile bud stage 15.451
SRR8316897Juvenile bud stage 7.722
SRR8316894Third green stage 7.042
SRR8316900Third green stage 16.841
SRR8316901Third green stage 14.710
SRR8316898Complete white stage 10.947
SRR8316899Complete white stage 29.257
SRR8316903Complete white stage 18.328
SRR8316902Silver flowering stage14.779
SRR8316904Silver flowering stage21.156
SRR8316905Silver flowering stage9.133
SRR8316906Gold flowering stage 34.876
SRR8316907Gold flowering stage 29.889
SRR8316908Gold flowering stage 31.785
SRP132670SRR6706286Control5.359
SRR6706287Light intensity 50%7.261
SRR6706288Light intensity 20%6.750
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.107
CNS0095593Slightly white alabastrum(diploid) 211.752
CNS0095594Slightly white alabastrum(diploid) 314.621
CNS0095595Whole white alabastrum(diploid) 210.681
CNS0095596Whole white alabastrum(diploid) 38.759
CNS0095597Whole white alabastrum(diploid) 49.488
CNS0095598Silvery flower (diploied) 115.525
CNS0095599Silvery flower (diploied) 214.429
CNS0095600Silvery flower (diploied) 324.736
CNS0095601Golden flower (diploid) 112.955
CNS0095602Golden flower (diploid) 222.656
CNS0095603Golden flower (diploid) 321.232
CNS0095604Slightly white alabastrum(tetraploid) 110.880
CNS0095605Slightly white alabastrum(tetraploid) 210.010
CNS0095606Slightly white alabastrum(tetraploid) 320.474
CNS0095607Whole white alabastrum(tetraploid) 17.448
CNS0095608Whole white alabastrum(tetraploid) 26.806
CNS0095609Whole white alabastrum(tetraploid) 311.976
CNS0095610Silvery flower (tetraploid) 127.588
CNS0095611Silvery flower (tetraploid) 225.568
CNS0095612Silvery flower (tetraploid) 324.035
CNS0095613Golden flower (tetraploid) 119.122
CNS0095614Golden flower (tetraploid) 225.386
CNS0095615Golden flower (tetraploid) 331.413
CRA001975CRR073297Stem 119.936
CRR073298Stem 214.248
CRR073299Stem 313.865
CRR073300Leaf 111.927
CRR073301Leaf 28.885
CRR073302Leaf 39.214
CRR073303Juvenile bud 18.975
CRR073304Juvenile bud 27.084
CRR073305Juvenile bud 38.256
CRR073306Third green 15.599
CRR073307Third green 26.997
CRR073308Third green 36.923
CRR073309Second white 111.145
CRR073310Second white 213.322
CRR073311Second white 315.840
CRR073312Silver flowering 114.772
CRR073313Silver flowering 27.756
CRR073314Silver flowering 311.784
CRR073315Gold flowering 14.652
CRR073316Gold flowering 210.502
CRR073317Gold flowering 37.865
CRR073318Tawny withering 120.251
CRR073319Tawny withering 221.500
CRR073320Tawny withering 325.140