Detail information of GWHGAAZE002172


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010260220.14.45957E-66PREDICTED: dihydroorotase, mitochondrial-like isoform X2 [Nelumbo nucifera]
COGYP_003897409.11E-45dihydroorotase
Swissprottr|Q0JJD1|PYRC_ORYSJ6E-63Dihydroorotase, mitochondrial (Precursor)
trEMBLtr|A5C5N8|A5C5N8_VITVI9E-66Putative uncharacterized protein {ECO:0000313|EMBL:CAN77628.1}
TAIR10AT4G22930.16E-50pyrimidin 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7183433971843141+
GWHAAZE00000001mRNA7183433971843141+
GWHAAZE00000001exon7183433971834342+
GWHAAZE00000001exon7183672171836881+
GWHAAZE00000001exon7184281571843141+
GWHAAZE00000001CDS7183433971834342+
GWHAAZE00000001CDS7183672171836881+
GWHAAZE00000001CDS7184281571843009+
GWHAAZE00000001three_prime_UTR7184301071843141+
Transcript Sequence

Network for GWHGAAZE002172

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01979.21Amidohydro_14902.60E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01465URA4, pyrC Metabolic pathways map01100
Pyrimidine metabolismmap00240

Gene Ontology

GO term OntologyName
GO:0016787molecular_functionhydrolase activity
GO:0016812molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.122
SRR3591706second leaf15.041
SRR3591707mature leaf17.863
SRR3591708Shoot apex20.070
SRR3591709Stem19.120
SRR3591710White floral bud21.546
SRR3591711White flower28.699
SRR3591712Green floral bud26.719
SRR3591713Yellow flower28.406
SRP173429 SRR8316895Juvenile bud stage 13.939
SRR8316896Juvenile bud stage 21.244
SRR8316897Juvenile bud stage 7.346
SRR8316894Third green stage 9.974
SRR8316900Third green stage 23.754
SRR8316901Third green stage 27.931
SRR8316898Complete white stage 10.163
SRR8316899Complete white stage 24.230
SRR8316903Complete white stage 14.397
SRR8316902Silver flowering stage11.692
SRR8316904Silver flowering stage14.740
SRR8316905Silver flowering stage6.580
SRR8316906Gold flowering stage 21.027
SRR8316907Gold flowering stage 25.484
SRR8316908Gold flowering stage 20.989
SRP132670SRR6706286Control7.491
SRR6706287Light intensity 50%7.565
SRR6706288Light intensity 20%9.364
CNP0000432CNS0095592Slightly white alabastrum(diploid) 128.644
CNS0095593Slightly white alabastrum(diploid) 225.806
CNS0095594Slightly white alabastrum(diploid) 326.282
CNS0095595Whole white alabastrum(diploid) 225.951
CNS0095596Whole white alabastrum(diploid) 333.499
CNS0095597Whole white alabastrum(diploid) 426.251
CNS0095598Silvery flower (diploied) 131.859
CNS0095599Silvery flower (diploied) 223.311
CNS0095600Silvery flower (diploied) 318.453
CNS0095601Golden flower (diploid) 120.746
CNS0095602Golden flower (diploid) 215.536
CNS0095603Golden flower (diploid) 315.834
CNS0095604Slightly white alabastrum(tetraploid) 126.660
CNS0095605Slightly white alabastrum(tetraploid) 223.800
CNS0095606Slightly white alabastrum(tetraploid) 318.999
CNS0095607Whole white alabastrum(tetraploid) 120.786
CNS0095608Whole white alabastrum(tetraploid) 221.798
CNS0095609Whole white alabastrum(tetraploid) 321.594
CNS0095610Silvery flower (tetraploid) 123.040
CNS0095611Silvery flower (tetraploid) 220.657
CNS0095612Silvery flower (tetraploid) 318.682
CNS0095613Golden flower (tetraploid) 126.228
CNS0095614Golden flower (tetraploid) 218.943
CNS0095615Golden flower (tetraploid) 321.594
CRA001975CRR073297Stem 118.107
CRR073298Stem 210.734
CRR073299Stem 38.528
CRR073300Leaf 112.577
CRR073301Leaf 212.557
CRR073302Leaf 310.569
CRR073303Juvenile bud 113.392
CRR073304Juvenile bud 27.861
CRR073305Juvenile bud 39.748
CRR073306Third green 14.256
CRR073307Third green 22.834
CRR073308Third green 32.624
CRR073309Second white 18.464
CRR073310Second white 26.587
CRR073311Second white 35.519
CRR073312Silver flowering 18.376
CRR073313Silver flowering 25.001
CRR073314Silver flowering 33.193
CRR073315Gold flowering 16.999
CRR073316Gold flowering 27.858
CRR073317Gold flowering 38.828
CRR073318Tawny withering 19.502
CRR073319Tawny withering 216.591
CRR073320Tawny withering 39.501