Gene detail

Detail information of GWHGAAZE002173

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274435.2	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 isoform X1 [Vitis vinifera]
Swissprot	tr\|O64477\|Y2913_ARATH	1E-130	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (Precursor)
trEMBL	tr\|F6H5E2\|F6H5E2_VITVI	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}
TAIR10	AT2G19130.1	2E-110	S-locus lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	71856582	71858087	+
GWHAAZE00000001	mRNA	71856582	71858087	+
GWHAAZE00000001	exon	71856582	71858087	+
GWHAAZE00000001	CDS	71856582	71858087	+

Transcript Sequence
>GWHTAAZE002177 TTGTCTTTCCAAACATATCCCTCCACCGGATTGGAGTTTCTTACCCCCGGTCAGTCTATCTCCGGTAACCAAACACTCTCCTCCGGTGGAGGAATATTCGAACTCGGATTCTTCACACCGGGTAACTCTACTAAATACTACATTGGCATATGGTACAAAAAACTACCTACGCCAAACAAAACAATAGTATGGGTAGCAAATAGAAACAACCCCGTTTCTAGCCCATACAATTCCCAGCTAAAACTTTCAGAAGAAGGGAATTTAGTTCTACTCAGCCAAAACAAAACCCAAATCTGGTCATCAAATTCCACCTCCAAAGAATCCAATTCCACGGTAGCCTTGCTTCTCGACAACGGGAATTTTCTCATCCGAGTGAATTCGAGTTCCTCCGACATTATCTGGCAGAGTTTTGATCACCCATCAAACACTTGGCTGCCCGGAGGGAAAGTTGGGTACAACAAACTAAAGCACGAAAGTCAAATCCTAACGTCGTGGAGAAGTGTAGAGAATCCAGCAACGAGTAAGTTCTCAGTGGAAGTAGAGATGAACGGTACAAGTCACATTCTGTTATGGAACAGGTCGAAACAATACTGGTCATCCGGGGAATGGACCGGTAAGGTCTTTAGAAACGTACCAGAAATACAATTGAATTTCTACATAACAAATTTAACGTACATTTCGAATGAGAATGAGAGTTATTTCACTTACGAAGCAGCTTTTCCTTCAGCTCTCACTAGATTTGTAATAGACGTAACCGGGCAGTTAAGGCAGTATGTTTGGGCGGCGAATTATACCCGGTGGAGTCTTTTTTGGACTCAACCGCCTCAGCCTTGCGAGGTTCATGGATTTTGTGGCATTTTTAGTAAATGTAGCAATTTGGGAGCTCCTTTGTGTAGTTGTATGGAAGGGTTTGAGCCGACGGTAGCTAAGGATTGGGACATGGAAGATCATACGGACGGGTGTGCGAGGAAAATTCCTTTGCGGTGTGGAAATGACACGTTTTCTCGGTTGCCGGACACCCGTTTTCCGGATGATTCGGTATCCTTGAGAACTGGGAGTAGTGCTGAATGCGAATCAGCTTGCTTGAGGAATTGTTCGTGTACCGGTTATGCTTATGATAGTGTAGATGGGTGTTTTGTTTGGGAAGGTGATTTGGTTAATTTGCAGCAGCTTACAAAAGATGATAACAGTGGAAAGGATTTCCATGTTCGAGTTTCAGCTTCGGAAGAGTCTACAATTATTACTAAAGCCAAGAGAAAGTCCAAGACTGGTTGGATTATTCTCGGAGCTCTTGGCGGATTCTCTACTTTTCTTGGCATTTTATTGGTGATTTTCTTGGTAGCCAAACAGAGGAGGAGAGAAAGAGGAAGTGAATTCGAGGCACAGGGCGATTCGTTGAGCCTTTTCAAATACAAAGAAATGAAAACCGCGACCAAAAACTTCTCTGAAAAATTAGGAGAAGGAGGTTTCGGTTCTGTTTTCAAAGGGACACTGCCAAATTCGAGT

Network for GWHGAAZE002173

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.25	B_lectin	61	166	2.20E-35
PF00954.21	S_locus_glycop	198	307	4.90E-26
PF08276.12	PAN_2	329	388	4.60E-15
PF00724.21	Oxidored_FMN	21	285	3.60E-64

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05894	OPR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0048544	biological_process	recognition of pollen
GO:0010181	molecular_function	FMN binding
GO:0016491	molecular_function	oxidoreductase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.146
	SRR3591706	second leaf	0.423
	SRR3591707	mature leaf	0.405
	SRR3591708	Shoot apex	0.780
	SRR3591709	Stem	0.708
	SRR3591710	White floral bud	0.890
	SRR3591711	White flower	1.836
	SRR3591712	Green floral bud	0.408
	SRR3591713	Yellow flower	0.435
SRP173429	SRR8316895	Juvenile bud stage	1.568
	SRR8316896	Juvenile bud stage	3.515
	SRR8316897	Juvenile bud stage	0.992
	SRR8316894	Third green stage	1.294
	SRR8316900	Third green stage	1.202
	SRR8316901	Third green stage	1.007
	SRR8316898	Complete white stage	0.430
	SRR8316899	Complete white stage	2.916
	SRR8316903	Complete white stage	0.973
	SRR8316902	Silver flowering stage	0.191
	SRR8316904	Silver flowering stage	0.433
	SRR8316905	Silver flowering stage	0.160
	SRR8316906	Gold flowering stage	0.393
	SRR8316907	Gold flowering stage	0.582
	SRR8316908	Gold flowering stage	0.751
SRP132670	SRR6706286	Control	1.825
	SRR6706287	Light intensity 50%	1.376
	SRR6706288	Light intensity 20%	0.869
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.142
	CNS0095593	Slightly white alabastrum(diploid) 2	1.418
	CNS0095594	Slightly white alabastrum(diploid) 3	1.241
	CNS0095595	Whole white alabastrum(diploid) 2	2.233
	CNS0095596	Whole white alabastrum(diploid) 3	0.174
	CNS0095597	Whole white alabastrum(diploid) 4	1.638
	CNS0095598	Silvery flower (diploied) 1	7.478
	CNS0095599	Silvery flower (diploied) 2	3.341
	CNS0095600	Silvery flower (diploied) 3	1.316
	CNS0095601	Golden flower (diploid) 1	3.208
	CNS0095602	Golden flower (diploid) 2	2.443
	CNS0095603	Golden flower (diploid) 3	2.221
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.233
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.183
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.537
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.968
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.284
	CNS0095610	Silvery flower (tetraploid) 1	0.124
	CNS0095611	Silvery flower (tetraploid) 2	0.347
	CNS0095612	Silvery flower (tetraploid) 3	0.135
	CNS0095613	Golden flower (tetraploid) 1	0.043
	CNS0095614	Golden flower (tetraploid) 2	0.104
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.699
	CRR073298	Stem 2	1.992
	CRR073299	Stem 3	2.366
	CRR073300	Leaf 1	0.815
	CRR073301	Leaf 2	1.004
	CRR073302	Leaf 3	0.281
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.064
	CRR073305	Juvenile bud 3	0.236
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.162
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.063
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.060
	CRR073316	Gold flowering 2	0.210
	CRR073317	Gold flowering 3	0.417
	CRR073318	Tawny withering 1	0.288
	CRR073319	Tawny withering 2	0.206
	CRR073320	Tawny withering 3	0.000