Gene detail

Detail information of GWHGAAZE002176

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI21857.3	0	unnamed protein product [Vitis vinifera]
COG	YP_003406129.1	3E-66	Mannan endo-1,4-beta-mannosidase
Swissprot	tr\|Q7Y223\|MAN2_ARATH	0	Mannan endo-1,4-beta-mannosidase 2 (Precursor)
trEMBL	tr\|E0CTE2\|E0CTE2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21857.3}
TAIR10	AT2G20680.1	3E-179	Glycosyl hydrolase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	72170978	72176153	+
GWHAAZE00000001	mRNA	72170978	72176153	+
GWHAAZE00000001	exon	72170978	72171322	+
GWHAAZE00000001	exon	72171938	72172135	+
GWHAAZE00000001	exon	72173332	72173454	+
GWHAAZE00000001	exon	72174193	72174404	+
GWHAAZE00000001	exon	72175748	72176153	+
GWHAAZE00000001	five_prime_UTR	72170978	72171025	+
GWHAAZE00000001	CDS	72171026	72171322	+
GWHAAZE00000001	CDS	72171938	72172135	+
GWHAAZE00000001	CDS	72173332	72173454	+
GWHAAZE00000001	CDS	72174193	72174404	+
GWHAAZE00000001	CDS	72175748	72176153	+

Transcript Sequence
>GWHTAAZE002180 CTGTTTTACCCAATTGTTGGCTTTGCCTCATTTGTTGCCTTCATATACATGTCATTTGGTGATTTGTGGGGAAGTTTCCAAACAGCACCTAAGAATGAGTTGAGTTTTGTGGAGAGGAATGGGACCCAATTCTTGCTTGATGGTAAACCCTTTTACATTAATGGATGGAACTCTTACTGGTTAATGGACCATGCTGTTAATGAAGATAGCAAGCCTAGAATTAGAGCAATGCTTAAAGCTGGTTCTAAGATGGGCCTCACCGTTTGTCGAACTTGGGCCTTCAATGATGGTGCCTATCATGCCCTCCAACTTTCCCCTGGTCGATTCGATGAACGCGTATTCAGGGCCTTGGATCACGTAATTGCGGAAGCCAAACATCATGGAATTAGGCTACTACTTAGCTTAGTTAATAACTTGCAAGCGTATGGTGGAAAGACTCAATATGTCAAGTGGGCATGGGAAGAGGGAGTCGCTTTAAGCTCTTCTAATGATTCATTCTTCTATGATCCATCCACGCGCATTTATTTCAAGAATTATGTCAAGACTGTGCTGACAAGGAAGAACACACTCACGGGAATCGAGTATAGGGATGACCCCACCATCTTTGGGTGGGAGTTAATTAACGAACCCCGCTGCATAACCGATCCTTCAGGAGACACTCTCCAAGACTGGCTAGAAGAAATGTCAGCTTTTGTGAAATCCATTGATAATAAACATCTAACAACTGTGGGCCTCGAAGGATTCTACGGCCTTAAAAATCCCAAAAGGTATGATGTCAATCCAGAACTGTGGGCGGCTGAACTTGGGTCTGATTTTGTTCGCAACTCCAAGATCTCAACCATTGATTTTGCCTCCGTTCATATTTACCCTGACCATTGGTTTCATGATAAAGAACTCGAAGATAAACTAAAATACGTGGCTAAATGGATGGAGTCCCACATTGAAGATGGTGATAATGACCTCAAAAAACCAGTCACGTTCACCGAATTTGGATTTTCAAGCGAGAACAAGGATTTCAAACCATCTCAGCGAGACAGGTTCTACAAGACCGTTTTTGACATAATATACAAATCTGCAAAAAAGAAGGGTGCTGGGGCAGGATCTTTTGTCTGGCAATTCTTTGTTGAAGGAATGGAAGAATTTAATGATGAATTCGGGATTGTACCGTGGGAGAGTCCATCGACATATAAGCTGATTACAGAACAATCTTGCAGGCTGGCTCAACTGGGAGTAATGCCTTCTCAAAACAGGCAATTGAGAAAGCTGTGTTTGCATAGACACTGA

Network for GWHGAAZE002176

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00150.19	Cellulase	31	351	4.60E-12
PF04852.13	DUF640	18	139	4.20E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19355	MAN	Metabolic pathways	map01100
K19355	MAN	Fructose and mannose metabolism	map00051

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.999
	SRR3591706	second leaf	8.473
	SRR3591707	mature leaf	8.715
	SRR3591708	Shoot apex	7.939
	SRR3591709	Stem	100.467
	SRR3591710	White floral bud	35.296
	SRR3591711	White flower	62.089
	SRR3591712	Green floral bud	27.590
	SRR3591713	Yellow flower	87.976
SRP173429	SRR8316895	Juvenile bud stage	7.060
	SRR8316896	Juvenile bud stage	13.338
	SRR8316897	Juvenile bud stage	6.080
	SRR8316894	Third green stage	6.362
	SRR8316900	Third green stage	23.633
	SRR8316901	Third green stage	21.771
	SRR8316898	Complete white stage	20.644
	SRR8316899	Complete white stage	18.635
	SRR8316903	Complete white stage	29.629
	SRR8316902	Silver flowering stage	30.048
	SRR8316904	Silver flowering stage	44.852
	SRR8316905	Silver flowering stage	21.923
	SRR8316906	Gold flowering stage	122.179
	SRR8316907	Gold flowering stage	108.381
	SRR8316908	Gold flowering stage	124.597
SRP132670	SRR6706286	Control	15.433
	SRR6706287	Light intensity 50%	18.692
	SRR6706288	Light intensity 20%	17.410
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.862
	CNS0095593	Slightly white alabastrum(diploid) 2	14.464
	CNS0095594	Slightly white alabastrum(diploid) 3	18.260
	CNS0095595	Whole white alabastrum(diploid) 2	26.890
	CNS0095596	Whole white alabastrum(diploid) 3	30.681
	CNS0095597	Whole white alabastrum(diploid) 4	32.236
	CNS0095598	Silvery flower (diploied) 1	18.199
	CNS0095599	Silvery flower (diploied) 2	15.273
	CNS0095600	Silvery flower (diploied) 3	44.395
	CNS0095601	Golden flower (diploid) 1	17.882
	CNS0095602	Golden flower (diploid) 2	51.242
	CNS0095603	Golden flower (diploid) 3	50.432
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.703
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.308
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.609
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.241
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.579
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.777
	CNS0095610	Silvery flower (tetraploid) 1	58.336
	CNS0095611	Silvery flower (tetraploid) 2	40.154
	CNS0095612	Silvery flower (tetraploid) 3	45.726
	CNS0095613	Golden flower (tetraploid) 1	46.708
	CNS0095614	Golden flower (tetraploid) 2	61.715
	CNS0095615	Golden flower (tetraploid) 3	68.541
CRA001975	CRR073297	Stem 1	13.961
	CRR073298	Stem 2	12.525
	CRR073299	Stem 3	10.485
	CRR073300	Leaf 1	22.574
	CRR073301	Leaf 2	17.801
	CRR073302	Leaf 3	16.198
	CRR073303	Juvenile bud 1	25.227
	CRR073304	Juvenile bud 2	32.748
	CRR073305	Juvenile bud 3	16.606
	CRR073306	Third green 1	37.899
	CRR073307	Third green 2	38.699
	CRR073308	Third green 3	35.257
	CRR073309	Second white 1	99.520
	CRR073310	Second white 2	93.323
	CRR073311	Second white 3	113.365
	CRR073312	Silver flowering 1	164.933
	CRR073313	Silver flowering 2	134.148
	CRR073314	Silver flowering 3	124.016
	CRR073315	Gold flowering 1	16.676
	CRR073316	Gold flowering 2	16.779
	CRR073317	Gold flowering 3	12.882
	CRR073318	Tawny withering 1	56.871
	CRR073319	Tawny withering 2	56.894
	CRR073320	Tawny withering 3	54.763