Gene detail

Detail information of GWHGAAZE002178

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14786.1	3.2931E-169	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9C918\|UBC38_ARATH	2E-117	Putative ubiquitin-conjugating enzyme E2 38
trEMBL	tr\|A0A068V2C1\|A0A068V2C1_COFCA	1E-169	Coffea canephora DH200=94 genomic scaffold, scaffold_91 {ECO:0000313\|EMBL:CDP14786.1}
TAIR10	AT3G15355.1	3E-98	ubiquitin-conjugating enzyme 25

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	72213208	72218747	+
GWHAAZE00000001	mRNA	72213208	72218747	+
GWHAAZE00000001	exon	72213208	72213246	+
GWHAAZE00000001	exon	72214821	72215099	+
GWHAAZE00000001	exon	72215247	72215310	+
GWHAAZE00000001	exon	72215886	72216025	+
GWHAAZE00000001	exon	72216102	72216413	+
GWHAAZE00000001	exon	72218496	72218747	+
GWHAAZE00000001	CDS	72213208	72213246	+
GWHAAZE00000001	CDS	72214821	72215099	+
GWHAAZE00000001	CDS	72215247	72215310	+
GWHAAZE00000001	CDS	72215886	72216025	+
GWHAAZE00000001	CDS	72216102	72216413	+
GWHAAZE00000001	CDS	72218496	72218747	+

Transcript Sequence
>GWHTAAZE002182 ATGGAAGGCTCTACGGCAGTGGATTCACTCACTAACCAGGACACTGCACCTAGTGCACCAATTGCTGCAAACACTCCAGCTCCGAGTTTGGTGGGTCCCCATGCCGCTGCAGGTACATCTGCTGGAATAGTTTCAGATATTGGCTGTAGCAAAATTAAGGCTGATGCTGCTACAAGCAGTTCAACAGTACCTAAGGGAAATGAGGAAGAAGAAAAGGGAGGTGACATCATGAGCAAGTTTACAAATTTCAAAAGATTTGATATTGTTGGTGATTTTTCGGATCATCACTATAACAGTGCGGGCTTCAACGGGCAGCAGCCTCCCAGGACTTGGACAAAGAAAATTCAGGACGAGTGGAAAATTCTGGAGAAGGACTTGCCTGATACTATATATGTTAGAGTGTATGAAACAAGGATGGATCTTTTGAGGGCTGTAATTGTAGGACCAGCAGGCACTCCCTACCACGATGGTCTTTTCGTCTTTGATGTTCTCTTCCCACCTACCTACCCTGACGTACCACCGATGGTTTACTACTATTCTGGCGGCCTTCGACTAAATCCAAACTTGTATGACTGTGGAAAAGTATGCCTGAGCCTTCTCAACACTTGGAATGGTAAAGGGAATGAGAAATGGGTGCCTCAGTCATCAACTATGCTACAAGTTTTGGTGTCTATACAAGCTTTGATTTTGAATGCAAAGCCCTTCTTTAATGAGCCTGGGTATGAAAGCATGTATGGTGGGCCAGAGGGGGAGAAAAGATCCAGGGATTACAATCAAGATGTTTTTATCCTATCACTGAAGACAATGATGTATACGCTTAGGAGGCCCCCAAAGTATTATGAGGACTTTGTTGCTGGCCATTTTCGTACCCGAGCACGCGATATCCTCTTGGCATGTAGAGCTTATATGGAGGGTGCGGAAGTAGGTTCTTTAGTCAACGGAAGAGCCGAGGACGGTAATAATTCACGCAGAAATAGCTGCCCTAAAGGCTTCAAGGAAGCTGTAGCTAAAATGGTGAATGGTCTTGTTTCAAATTTCATTAAAAATGGAGCAGCTGGCTGTGAGGAGTTCCGTATTCAGGGATGA

Network for GWHGAAZE002178

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00179.27	UQ_con	115	240	9.30E-24
PF09335.12	SNARE_assoc	103	216	9.50E-24

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	UBC

KEGG pathway

KO	Enzyme	pathway	mapID
K10581	UBE2O	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	67.156
	SRR3591706	second leaf	30.005
	SRR3591707	mature leaf	32.822
	SRR3591708	Shoot apex	50.215
	SRR3591709	Stem	72.269
	SRR3591710	White floral bud	71.959
	SRR3591711	White flower	113.337
	SRR3591712	Green floral bud	75.854
	SRR3591713	Yellow flower	84.153
SRP173429	SRR8316895	Juvenile bud stage	53.466
	SRR8316896	Juvenile bud stage	73.804
	SRR8316897	Juvenile bud stage	33.230
	SRR8316894	Third green stage	29.952
	SRR8316900	Third green stage	76.376
	SRR8316901	Third green stage	75.501
	SRR8316898	Complete white stage	27.816
	SRR8316899	Complete white stage	138.683
	SRR8316903	Complete white stage	42.507
	SRR8316902	Silver flowering stage	26.054
	SRR8316904	Silver flowering stage	29.674
	SRR8316905	Silver flowering stage	15.754
	SRR8316906	Gold flowering stage	50.151
	SRR8316907	Gold flowering stage	54.744
	SRR8316908	Gold flowering stage	55.746
SRP132670	SRR6706286	Control	82.459
	SRR6706287	Light intensity 50%	75.320
	SRR6706288	Light intensity 20%	73.640
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	52.820
	CNS0095593	Slightly white alabastrum(diploid) 2	50.805
	CNS0095594	Slightly white alabastrum(diploid) 3	55.618
	CNS0095595	Whole white alabastrum(diploid) 2	43.468
	CNS0095596	Whole white alabastrum(diploid) 3	35.252
	CNS0095597	Whole white alabastrum(diploid) 4	37.632
	CNS0095598	Silvery flower (diploied) 1	51.389
	CNS0095599	Silvery flower (diploied) 2	39.460
	CNS0095600	Silvery flower (diploied) 3	69.250
	CNS0095601	Golden flower (diploid) 1	40.608
	CNS0095602	Golden flower (diploid) 2	72.928
	CNS0095603	Golden flower (diploid) 3	75.338
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.950
	CNS0095605	Slightly white alabastrum(tetraploid) 2	45.851
	CNS0095606	Slightly white alabastrum(tetraploid) 3	82.442
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.044
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.666
	CNS0095609	Whole white alabastrum(tetraploid) 3	47.786
	CNS0095610	Silvery flower (tetraploid) 1	64.381
	CNS0095611	Silvery flower (tetraploid) 2	64.889
	CNS0095612	Silvery flower (tetraploid) 3	37.986
	CNS0095613	Golden flower (tetraploid) 1	37.782
	CNS0095614	Golden flower (tetraploid) 2	58.234
	CNS0095615	Golden flower (tetraploid) 3	34.178
CRA001975	CRR073297	Stem 1	81.628
	CRR073298	Stem 2	79.162
	CRR073299	Stem 3	83.539
	CRR073300	Leaf 1	84.425
	CRR073301	Leaf 2	77.522
	CRR073302	Leaf 3	65.983
	CRR073303	Juvenile bud 1	67.420
	CRR073304	Juvenile bud 2	55.287
	CRR073305	Juvenile bud 3	110.340
	CRR073306	Third green 1	13.933
	CRR073307	Third green 2	14.340
	CRR073308	Third green 3	17.578
	CRR073309	Second white 1	26.462
	CRR073310	Second white 2	20.554
	CRR073311	Second white 3	16.299
	CRR073312	Silver flowering 1	15.667
	CRR073313	Silver flowering 2	20.242
	CRR073314	Silver flowering 3	17.096
	CRR073315	Gold flowering 1	18.450
	CRR073316	Gold flowering 2	25.694
	CRR073317	Gold flowering 3	20.662
	CRR073318	Tawny withering 1	53.691
	CRR073319	Tawny withering 2	43.965
	CRR073320	Tawny withering 3	49.394