Detail information of GWHGAAZE002183


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010250266.13.15175E-89PREDICTED: arogenate dehydrogenase 2, chloroplastic-like [Nelumbo nucifera]
COGYP_005063728.11E-17prephenate dehydrogenase
Swissprottr|Q9LMR3|TYRA2_ARATH5E-81Arogenate dehydrogenase 2, chloroplastic (Precursor)
trEMBLtr|U5DAW0|U5DAW0_AMBTC1E-87Uncharacterized protein {ECO:0000313|EMBL:ERN19375.1}
TAIR10AT1G15710.12E-66prephenate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7229596172296578-
GWHAAZE00000001mRNA7229596172296578-
GWHAAZE00000001exon7229596172296133-
GWHAAZE00000001exon7229622172296578-
GWHAAZE00000001CDS7229622172296578-
GWHAAZE00000001CDS7229596172296133-
Transcript Sequence

Network for GWHGAAZE002183

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02153.18PDH131194.00E-10
PF08240.13ADH_N291551.50E-22
PF00107.27ADH_zinc_N1993299.40E-24
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00001E1.1.1.1, adh Metabolic pathways map01100
Metabolic pathwaysmap01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of amino acidsmap01230
Degradation of aromatic compoundsmap01220
Glycolysis / Gluconeogenesismap00010
Fatty acid degradationmap00071
Tyrosine metabolismmap00350
Phenylalanine, tyrosine and tryptophan biosynthesismap00400
Retinol metabolismmap00830
Chloroalkane and chloroalkene degradationmap00625
Naphthalene degradationmap00626
Metabolism of xenobiotics by cytochrome P450map00980
Drug metabolism - cytochrome P450map00982

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0006571biological_processtyrosine biosynthetic process
GO:0008270molecular_functionzinc ion binding
GO:0016491molecular_functionoxidoreductase activity
GO:0004665molecular_functionprephenate dehydrogenase (NADP+) activity
GO:0008977molecular_functionprephenate dehydrogenase (NAD+) activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.624
SRR3591706second leaf0.799
SRR3591707mature leaf2.081
SRR3591708Shoot apex2.474
SRR3591709Stem4.980
SRR3591710White floral bud3.543
SRR3591711White flower5.617
SRR3591712Green floral bud1.810
SRR3591713Yellow flower8.691
SRP173429 SRR8316895Juvenile bud stage 3.256
SRR8316896Juvenile bud stage 6.821
SRR8316897Juvenile bud stage 3.345
SRR8316894Third green stage 1.372
SRR8316900Third green stage 2.366
SRR8316901Third green stage 1.974
SRR8316898Complete white stage 1.434
SRR8316899Complete white stage 5.119
SRR8316903Complete white stage 2.642
SRR8316902Silver flowering stage1.013
SRR8316904Silver flowering stage3.448
SRR8316905Silver flowering stage1.684
SRR8316906Gold flowering stage 4.920
SRR8316907Gold flowering stage 5.312
SRR8316908Gold flowering stage 5.637
SRP132670SRR6706286Control2.470
SRR6706287Light intensity 50%1.933
SRR6706288Light intensity 20%1.264
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.021
CNS0095593Slightly white alabastrum(diploid) 22.835
CNS0095594Slightly white alabastrum(diploid) 35.430
CNS0095595Whole white alabastrum(diploid) 21.712
CNS0095596Whole white alabastrum(diploid) 33.097
CNS0095597Whole white alabastrum(diploid) 42.023
CNS0095598Silvery flower (diploied) 13.813
CNS0095599Silvery flower (diploied) 24.485
CNS0095600Silvery flower (diploied) 35.249
CNS0095601Golden flower (diploid) 13.610
CNS0095602Golden flower (diploid) 27.583
CNS0095603Golden flower (diploid) 36.175
CNS0095604Slightly white alabastrum(tetraploid) 11.876
CNS0095605Slightly white alabastrum(tetraploid) 22.270
CNS0095606Slightly white alabastrum(tetraploid) 30.658
CNS0095607Whole white alabastrum(tetraploid) 10.853
CNS0095608Whole white alabastrum(tetraploid) 20.310
CNS0095609Whole white alabastrum(tetraploid) 30.767
CNS0095610Silvery flower (tetraploid) 11.286
CNS0095611Silvery flower (tetraploid) 21.190
CNS0095612Silvery flower (tetraploid) 31.844
CNS0095613Golden flower (tetraploid) 10.961
CNS0095614Golden flower (tetraploid) 21.408
CNS0095615Golden flower (tetraploid) 31.233
CRA001975CRR073297Stem 13.090
CRR073298Stem 22.039
CRR073299Stem 30.897
CRR073300Leaf 12.269
CRR073301Leaf 21.476
CRR073302Leaf 31.111
CRR073303Juvenile bud 11.822
CRR073304Juvenile bud 22.705
CRR073305Juvenile bud 31.478
CRR073306Third green 11.121
CRR073307Third green 21.662
CRR073308Third green 31.108
CRR073309Second white 12.888
CRR073310Second white 24.017
CRR073311Second white 32.471
CRR073312Silver flowering 12.672
CRR073313Silver flowering 22.181
CRR073314Silver flowering 33.879
CRR073315Gold flowering 15.269
CRR073316Gold flowering 26.317
CRR073317Gold flowering 35.643
CRR073318Tawny withering 17.436
CRR073319Tawny withering 26.008
CRR073320Tawny withering 33.038