Gene detail

Detail information of GWHGAAZE002189

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006356322.1	1.81189E-22	PREDICTED: F-box/kelch-repeat protein At3g23880-like [Solanum tuberosum]
trEMBL	tr\|V4SDS8\|V4SDS8_9ROSI	4E-22	Uncharacterized protein {ECO:0000313\|EMBL:ESR38697.1}
TAIR10	AT1G32600.1	0.00008	F-box associated ubiquitination effector family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	72473343	72474342	-
GWHAAZE00000001	mRNA	72473343	72474342	-
GWHAAZE00000001	exon	72474088	72474342	-
GWHAAZE00000001	exon	72473343	72473978	-
GWHAAZE00000001	CDS	72474088	72474342	-
GWHAAZE00000001	CDS	72473343	72473978	-

Transcript Sequence
>GWHTAAZE002193 ATGTTCAATGAAACCCTAACACCGGGATTGTATTGCGATATCCTCTATTTTAGATCATGCCGTTATACTTTACTCGGTCCGATTGATGGCTTGTTTTTACTGCACAATTATGATAATAATCGAGTGGCTATATGGAACCCTGCTACAACGGAGTTTAAATTCCTCCCAAATCCTAGTTTTGACTTTCCGCCAATTTCCCATAGTTTTGAGCATATATTTGGATTTGGTTTAGACCTTTCGACAAACGAGTATAAGCCAACTTATTCGGGGAAATATTGGCGCATCAATGGGGGATACCAGTGCAAGTCTAATGCAACATACTTGAATGGATGTTTTAACTGGTTGTTGCTGCTCGATATGGAGTTCAAATACAAGGTACTCTTATTTTACATGGGTGATGATGAGTTTAGGGAGTTAAATGTCCCAGCTTACTGCAATAATATCGACCTGTTAATCCATTTGGTTAGGTATCAGCTCACTCTTGCTTTGCACGATGATAATCGATCAATTGCTCTATTGGTAATGGAAAATGATATTCATTCTATTGAGTTTGTCTCGTCTATTAGCCTGTGCTTATTGAACAACCAAGAGGAGGAAGAGGGTTGTTGGAACAAACTTTACACTATTCAACTTGCACCCCCTCTCCAACCATTACAATTGCGAGTACCACTTGGGTTATGGAAGAACAGCGGGATTTTCTTCCAAGACGACACGAATCGGCTTGTTTTATACAACATTAATACACATGAAATTATTGAACTCGGAGTTCGGACCTTTGATTTCTGCAGCTGCAATTCCATTATGGTTTTCAATTACAAGGAGAGCCTAGTGTCAGTTGGAGGAGGAAAGAAGGATAAATCTCATGCTATGGTTCGCAATTTCCTTGCCTAG

Network for GWHGAAZE002189

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00337.23	Gal-bind_lectin	162	327	2.20E-23
PF01762.22	Galactosyl_T	373	556	3.00E-39
PF00481.22	PP2C	645	907	3.10E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006486	biological_process	protein glycosylation
GO:0016020	cellular_component	membrane
GO:0030246	molecular_function	carbohydrate binding
GO:0003824	molecular_function	catalytic activity
GO:0008378	molecular_function	galactosyltransferase activity
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.695
	SRR3591706	second leaf	0.219
	SRR3591707	mature leaf	0.683
	SRR3591708	Shoot apex	2.466
	SRR3591709	Stem	1.370
	SRR3591710	White floral bud	0.855
	SRR3591711	White flower	0.973
	SRR3591712	Green floral bud	4.746
	SRR3591713	Yellow flower	0.458
SRP173429	SRR8316895	Juvenile bud stage	0.151
	SRR8316896	Juvenile bud stage	0.460
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.336
	SRR8316901	Third green stage	0.125
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.190
	SRR8316903	Complete white stage	0.333
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.120
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.548
	CNS0095593	Slightly white alabastrum(diploid) 2	0.081
	CNS0095594	Slightly white alabastrum(diploid) 3	0.856
	CNS0095595	Whole white alabastrum(diploid) 2	0.998
	CNS0095596	Whole white alabastrum(diploid) 3	0.250
	CNS0095597	Whole white alabastrum(diploid) 4	0.744
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.421
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.286
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.414
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.376
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.729
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.789
	CNS0095610	Silvery flower (tetraploid) 1	0.744
	CNS0095611	Silvery flower (tetraploid) 2	0.578
	CNS0095612	Silvery flower (tetraploid) 3	0.616
	CNS0095613	Golden flower (tetraploid) 1	0.469
	CNS0095614	Golden flower (tetraploid) 2	0.431
	CNS0095615	Golden flower (tetraploid) 3	0.265
CRA001975	CRR073297	Stem 1	0.030
	CRR073298	Stem 2	0.192
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.199
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.243
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.004
	CRR073308	Third green 3	0.003
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.105
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000