Gene detail

Detail information of GWHGAAZE002199

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006357556.1	2.4885E-99	PREDICTED: clathrin light chain 1-like [Solanum tuberosum]
Swissprot	tr\|Q9SKU1\|CLC1_ARATH	2E-78	Clathrin light chain 1
trEMBL	tr\|M1BKE6\|M1BKE6_SOLTU	9E-100	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400047261}
TAIR10	AT2G20760.1	2E-60	Clathrin light chain protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	72666098	72670079	-
GWHAAZE00000001	mRNA	72666098	72670079	-
GWHAAZE00000001	exon	72669691	72670079	-
GWHAAZE00000001	exon	72666988	72667141	-
GWHAAZE00000001	exon	72666098	72666718	-
GWHAAZE00000001	CDS	72669691	72670079	-
GWHAAZE00000001	CDS	72666988	72667141	-
GWHAAZE00000001	CDS	72666098	72666718	-

Transcript Sequence
>GWHTAAZE002203 ATGGCGTCCTTTGATGATACATACAGCAACGAAGGAGGAGGCGAAGGAATTCAACCAACTTCTCGTCCCTTCGACGACAGCGGCGGCTACACAGGTTACGAGTTCGACGCTCCCGCCGACGACTTCAACGCCGGAGGCATGTCTAATAATAACACCGACATGCATTCAGGAGGTGAGGCCTTTGGCTTTGGTTCTTCTCCTAGTCCTAATCCGGAATATTCTCCGTCGCCTTTCGAGTCTGCGCCGGTTGCGGAATCGAACGGCGAATCGAAGCCGTACGATCTCGGAGGTGATGATACGGATGGAATTTTTACCTCCAATGATGGTCCGTTGCTTCCGGACCCCAGCGAGATGAGGGAGGAAGGCGCTGCGTATCGCGAGTGGCGTCGCCAAAATGCCATTTATCTCGAGGAGAAGGAGAAGAGAGAGAAGGAGATGCGGAATCAGATCATTAATGAAGCTGAGGAATATAAGCGATCCTTTTATGAGAAAAGGAAAACAAACTGCGAAACTAACAAGGCTCAGAATAGAGAACGAGAGAAGCTGTACCTAGCCAACCAAGAGAAGTTCCACAAAGAAGCTGACAAACAGTACTGGAAAGCAATAGCAGAACTCATTCCTCGGGAGGTGGCTAACATCGAGAATAGGAGAGGGAAAAAGAAGGACGAGGAAAAGAAGCCTTCTGTAGTGGTCATTCAAGGCCCGAAGCCCGGGAAACCCACCGATCTCTCAAGAATGAGGCAAATGCTTTCGAAGCTGAAACAAAAGCCTCCAGCTCACATGATTCCACCTCCACTGCCACCCACAAAAGAAGGGAAAGATACAAAAGACGGGAATACTGCCGCCACTGATGGTAAAACTGCCGCCAAGGACGGTAAAGGTGCCGCCCCTGAAGCCGCTAAGGTCGGGAAAGGTGCTGCCCCCGAAGCCGCTAAGGACGGGGAAGGTGCCGCCACAGATGAAAAAGATGCTGCCACCTCGGAAGCTGCTAAGGATGTTAATGACGGAAAAGAGGCGGCCCCGACATCAGCCCCATCTAATTTTATGAACAAGTTTACTTCGCTGGTGAAAAATGTTAATCCCGGTGGCAAACCTGAGTCGTCGAAACCAGAGGCAAGTGAGGGAGAACAGGTTACTGAAACGGAATCTGGCTCAACAGCATGA

Network for GWHGAAZE002199

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00085.21	Thioredoxin	83	185	1.50E-24
PF01086.18	Clathrin_lg_ch	108	208	7.60E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03671	trxA	NOD-like receptor signaling pathway	map04621

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0045454	biological_process	cell redox homeostasis
GO:0030130	cellular_component	clathrin coat of trans-Golgi network vesicle
GO:0030132	cellular_component	clathrin coat of coated pit
GO:0005198	molecular_function	structural molecule activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.265
	SRR3591706	second leaf	16.457
	SRR3591707	mature leaf	30.406
	SRR3591708	Shoot apex	18.949
	SRR3591709	Stem	74.548
	SRR3591710	White floral bud	32.083
	SRR3591711	White flower	40.584
	SRR3591712	Green floral bud	50.360
	SRR3591713	Yellow flower	35.910
SRP173429	SRR8316895	Juvenile bud stage	36.867
	SRR8316896	Juvenile bud stage	62.132
	SRR8316897	Juvenile bud stage	30.725
	SRR8316894	Third green stage	16.279
	SRR8316900	Third green stage	61.633
	SRR8316901	Third green stage	73.166
	SRR8316898	Complete white stage	10.361
	SRR8316899	Complete white stage	40.489
	SRR8316903	Complete white stage	16.688
	SRR8316902	Silver flowering stage	27.641
	SRR8316904	Silver flowering stage	24.856
	SRR8316905	Silver flowering stage	15.230
	SRR8316906	Gold flowering stage	57.484
	SRR8316907	Gold flowering stage	65.069
	SRR8316908	Gold flowering stage	72.570
SRP132670	SRR6706286	Control	37.710
	SRR6706287	Light intensity 50%	34.691
	SRR6706288	Light intensity 20%	32.086
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.969
	CNS0095593	Slightly white alabastrum(diploid) 2	36.856
	CNS0095594	Slightly white alabastrum(diploid) 3	54.866
	CNS0095595	Whole white alabastrum(diploid) 2	53.364
	CNS0095596	Whole white alabastrum(diploid) 3	64.294
	CNS0095597	Whole white alabastrum(diploid) 4	54.548
	CNS0095598	Silvery flower (diploied) 1	36.449
	CNS0095599	Silvery flower (diploied) 2	47.667
	CNS0095600	Silvery flower (diploied) 3	43.244
	CNS0095601	Golden flower (diploid) 1	60.138
	CNS0095602	Golden flower (diploid) 2	65.171
	CNS0095603	Golden flower (diploid) 3	59.257
	CNS0095604	Slightly white alabastrum(tetraploid) 1	68.362
	CNS0095605	Slightly white alabastrum(tetraploid) 2	68.028
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.141
	CNS0095607	Whole white alabastrum(tetraploid) 1	83.711
	CNS0095608	Whole white alabastrum(tetraploid) 2	79.378
	CNS0095609	Whole white alabastrum(tetraploid) 3	69.624
	CNS0095610	Silvery flower (tetraploid) 1	29.505
	CNS0095611	Silvery flower (tetraploid) 2	28.247
	CNS0095612	Silvery flower (tetraploid) 3	13.220
	CNS0095613	Golden flower (tetraploid) 1	22.193
	CNS0095614	Golden flower (tetraploid) 2	30.020
	CNS0095615	Golden flower (tetraploid) 3	13.734
CRA001975	CRR073297	Stem 1	31.183
	CRR073298	Stem 2	30.816
	CRR073299	Stem 3	32.427
	CRR073300	Leaf 1	36.825
	CRR073301	Leaf 2	34.228
	CRR073302	Leaf 3	33.487
	CRR073303	Juvenile bud 1	24.745
	CRR073304	Juvenile bud 2	36.597
	CRR073305	Juvenile bud 3	8.533
	CRR073306	Third green 1	20.862
	CRR073307	Third green 2	14.108
	CRR073308	Third green 3	18.401
	CRR073309	Second white 1	14.067
	CRR073310	Second white 2	22.600
	CRR073311	Second white 3	18.218
	CRR073312	Silver flowering 1	28.371
	CRR073313	Silver flowering 2	19.066
	CRR073314	Silver flowering 3	26.776
	CRR073315	Gold flowering 1	15.630
	CRR073316	Gold flowering 2	15.848
	CRR073317	Gold flowering 3	10.153
	CRR073318	Tawny withering 1	42.302
	CRR073319	Tawny withering 2	53.267
	CRR073320	Tawny withering 3	46.949