Detail information of GWHGAAZE002204


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008226663.11.26199E-89PREDICTED: protochlorophyllide reductase, chloroplastic [Prunus mume]
COGYP_007155133.15E-54light-dependent protochlorophyllide reductase
Swissprottr|Q9SDT1|POR_DAUCA7E-89Protochlorophyllide reductase, chloroplastic (Precursor)
trEMBLtr|K4CXM0|K4CXM0_SOLLC1E-89Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc10g006900.2.1}
TAIR10AT1G03630.13E-61protochlorophyllide oxidoreductase C

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7272565172729465-
GWHAAZE00000001mRNA7272565172729465-
GWHAAZE00000001exon7272940172729465-
GWHAAZE00000001exon7272877172729071-
GWHAAZE00000001exon7272565172725806-
GWHAAZE00000001CDS7272940172729465-
GWHAAZE00000001CDS7272877172729071-
GWHAAZE00000001CDS7272565172725806-
Transcript Sequence

Network for GWHGAAZE002204

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03083.17MtN3_slv1761.80E-22
PF03083.17MtN3_slv1112071.80E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00218por Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0016021cellular_componentintegral component of membrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf97.365
SRR3591706second leaf143.647
SRR3591707mature leaf102.954
SRR3591708Shoot apex124.649
SRR3591709Stem110.836
SRR3591710White floral bud13.684
SRR3591711White flower20.185
SRR3591712Green floral bud9.103
SRR3591713Yellow flower2.901
SRP173429 SRR8316895Juvenile bud stage 23.761
SRR8316896Juvenile bud stage 22.159
SRR8316897Juvenile bud stage 19.988
SRR8316894Third green stage 5.979
SRR8316900Third green stage 9.863
SRR8316901Third green stage 8.281
SRR8316898Complete white stage 0.651
SRR8316899Complete white stage 10.112
SRR8316903Complete white stage 5.150
SRR8316902Silver flowering stage0.683
SRR8316904Silver flowering stage0.888
SRR8316905Silver flowering stage0.288
SRR8316906Gold flowering stage 2.269
SRR8316907Gold flowering stage 1.531
SRR8316908Gold flowering stage 1.508
SRP132670SRR6706286Control7.667
SRR6706287Light intensity 50%6.847
SRR6706288Light intensity 20%6.473
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.473
CNS0095593Slightly white alabastrum(diploid) 220.130
CNS0095594Slightly white alabastrum(diploid) 324.102
CNS0095595Whole white alabastrum(diploid) 215.505
CNS0095596Whole white alabastrum(diploid) 37.968
CNS0095597Whole white alabastrum(diploid) 411.910
CNS0095598Silvery flower (diploied) 164.190
CNS0095599Silvery flower (diploied) 267.952
CNS0095600Silvery flower (diploied) 315.635
CNS0095601Golden flower (diploid) 181.284
CNS0095602Golden flower (diploid) 235.949
CNS0095603Golden flower (diploid) 333.357
CNS0095604Slightly white alabastrum(tetraploid) 120.299
CNS0095605Slightly white alabastrum(tetraploid) 224.302
CNS0095606Slightly white alabastrum(tetraploid) 334.383
CNS0095607Whole white alabastrum(tetraploid) 119.518
CNS0095608Whole white alabastrum(tetraploid) 29.524
CNS0095609Whole white alabastrum(tetraploid) 311.605
CNS0095610Silvery flower (tetraploid) 15.637
CNS0095611Silvery flower (tetraploid) 216.608
CNS0095612Silvery flower (tetraploid) 311.453
CNS0095613Golden flower (tetraploid) 13.878
CNS0095614Golden flower (tetraploid) 213.033
CNS0095615Golden flower (tetraploid) 32.035
CRA001975CRR073297Stem 114.107
CRR073298Stem 214.296
CRR073299Stem 327.586
CRR073300Leaf 15.737
CRR073301Leaf 26.490
CRR073302Leaf 36.709
CRR073303Juvenile bud 14.022
CRR073304Juvenile bud 22.290
CRR073305Juvenile bud 33.806
CRR073306Third green 11.767
CRR073307Third green 20.926
CRR073308Third green 32.060
CRR073309Second white 14.664
CRR073310Second white 22.691
CRR073311Second white 34.977
CRR073312Silver flowering 12.259
CRR073313Silver flowering 21.709
CRR073314Silver flowering 32.079
CRR073315Gold flowering 1130.460
CRR073316Gold flowering 2142.861
CRR073317Gold flowering 394.390
CRR073318Tawny withering 122.970
CRR073319Tawny withering 229.094
CRR073320Tawny withering 325.155