Gene detail

Detail information of GWHGAAZE002205

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010245313.1	8.0373E-115	PREDICTED: protochlorophyllide reductase-like [Nelumbo nucifera]
COG	YP_001515542.1	3E-60	protochlorophyllide oxidoreductase
Swissprot	tr\|Q9SDT1\|POR_DAUCA	3E-106	Protochlorophyllide reductase, chloroplastic (Precursor)
trEMBL	tr\|D7TE52\|D7TE52_VITVI	3E-115	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28775.3}
TAIR10	AT1G03630.2	8E-71	protochlorophyllide oxidoreductase C

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	72730390	72732386	-
GWHAAZE00000001	mRNA	72730390	72732386	-
GWHAAZE00000001	exon	72730390	72730950	-
GWHAAZE00000001	exon	72732151	72732249	-
GWHAAZE00000001	exon	72732330	72732386	-
GWHAAZE00000001	CDS	72732330	72732386	-
GWHAAZE00000001	CDS	72732151	72732249	-
GWHAAZE00000001	CDS	72730390	72730950	-

Transcript Sequence
>GWHTAAZE002209 ATGGCTCTACAAGCAGCAGCTTCTTTACTGCCCTCTGCTATTTCTAACCACAAAGAGGGGAAAGGCAATTCCTCTCTCAAGGAAACTGCTCTGTTTGGGGTTGCATTATCAGATAATCTCAAAACTGAATTCAACCCTTGTTTCATAGCAAGGAAGGAATTCCCAAGGAAACTATGCGTTGGACCCATTAGAGCACAAACAGCAACTACCACCCCAGCAATCACCCAAGCCTCACCAGAAGGCAAGAAAACACTGCGAAAGGGCACCGTCGTAATAACCGGAGCCTCCTCGGGTTTGGGTTTGGCCACAGCAAAAGCTCTAGCCGAAACTGACAAATGGCATGTGATTATGGCCTGTAGAAATTTCCTCAAGGCCGAGAGAGCAGCTAAATCGGTAGGCATTGCTAAAGAAAACTATACGGTCATGCACCTTGACCTTGCTTCACTTGAAAGCGTGAGGCAATTTGTAGATGCATTTAAACGTTCGAGCAGACCAATTGATTCGCTTGTGTGTAATGCCGCTGTTTATTTGCCTACTGCAAAAGAGCCGAGTTATACTGCCGAAGGGTTTGAGCTTAGTGTGGGTACTAATCACCTTGGGCACTTTCTTCTCGCCCGGTTGCTGCTAGATGACTTGAAAGAATCGGATTATCCTTTTAAACGGCTCATTATTGTTGGCTCAATTACAGGTACTTGTTTTGATTCAAACCCATATTAA

Network for GWHGAAZE002205

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	89	230	3.50E-19
PF09497.11	Med12	156	217	3.70E-16

Protein Sequence

>GWHPAAZE024905
MQRYHAASAVNNSGGGGASARDTSRAETSLLPNNFSLNSRRSVTLAPYKLRCDKEPLNSRLGPPDFNPPTPNCPEETLTRENVQSGYREAVEMLEEAREISLSQVNVFKNPVILKCKEAIRKCHRAINESRAQKRKAGLVYGVPLGDTLLSKSGAFPEQKPCDEESRKKWIEGWLSQPHKRLRLLADHVPHGYKKKSLFEVLIRNKVPLLRATWFIKVTYLNQVRPSSPSISSLVPDKIRFTRSEQWTKDLIEYLQYLLDEFVLRNNSHATVNVRSQIAYGGSMQYKGDPTAALGDGDEGSIYFKWWYVVRILQWHHAEGLLLPSLIIDWVLNQLQEKELFGILQLLLPIIYGLLETIVLSQTYVRTLVGIAIRFIREPSPGGSDLVDNSRREYTISALVEMLRYLILSVPDTFVALDCFPLPSCVLSHSVNDASFLSKLADRADVQSRFLSIDCVVSSIQKRAGNLARAARPCNPGHNVAKAVQEMDNALIRGDVKVPYKFLFENLYDAPVDERWTSEVSPCLLSSLKWIGTVSLSLVSSVFFVCEWATCDFRDFRTGRPHGLKFTGRRDFSQVYIAIRLLKMEMKNMQSSLRCKSDIFQSPGPLHDVIVCWIDQHEAQNEEGFRRLQLLIIELTRSGVFYPQAYLRQLIVSGIMDKGGPTVDLERRKRHFKILKQLPGPYIHDALEEAKIAEVAVLTEAMHVYSNERRLILRGLLDHRKIGNSANSSSKKQKNYLTFGRDHSFSSKNANRDAVLEELKASISVLLQLPNASTTSTSIGLDESQGSAKRLIGSKASKTDLGEGTPGCEECRKAKKQKLGDERSSYLQGHSANPLDDDELWWVKKGPIKPVESARPDPPPLKPPKQTTRGRQKSRKSASLAQLAAARIEGSQGASTSHVCDNKISCPHHRTGSSDGDAPKSTDIVSIVSIGKALKQLRFGEQRAITAWLIGVVRQLVEETERNVAKASQYNRSFTPSADDRGSVQWKLGEDELSTIMYLMDISNDLVSAAKFLLWLLPKVPSSPSSTIQGGRSILTVPRNVENHACAVGEAFLIASLRRFENILAAIDLVPQTLSASMHRAATIMASNGRISGSSAFVYARHLLKKYGDLESVSEWEKNFKATYDKRLTSELDSGRLLDGDLGFPLGVPAGVEDLDEFLRQKISGVRLSRVGLSMREVVQRQIDEALHFFYGKERKPFAAGGAIKNPNLEKRDDGYHQTAQQIVVGIMECIRQTGGAAQEGDPTLVSSAVSAIFYNIAKVPDLTDSGNSPLYFARHVLRVHINCLALLKEALGERQSRVFEIALATEASSAIAQAIAPSKTPRGQFLETRDPTVHLANENSSTKSALGRPAKIAAAVSALVIGSILHGVASLERMVNVFRLKEGLDLIQFVKAVRSNSNGSVRSIAAFKPDNMVEISLHWFRVLVGNCRTVSDGFIVELLGEASIVALSRMQRLLPLGLVFPPAYSIFAFIIWRPFILNSSIGTREDIHQLHHSLTLAITDVLKHLPFRDVCLRDTRGLYDIVAADPTDAEFACMLETSGTDMHLKALAFVPLRARLFLNAIIDCQMPQQDDANRIFSKVQNAENELKLRDKLVHVLDTLQAAKFHWQWVELRLLLDEQALIEKLKAHDTSLAEAIRALSPNHDKDAALDNENNFILIILTRLLVRPDAAPLFAEVVHLFGRSLEDSMLLQAKWLLGGHDVLLGRKSIRQKLFYLADSKGLPTKSQFSRPWGWCYSNFDNATDKGDKRKTEVTSLEEGEVVDEGTDSKRYGRGGPTKDLEVEIITQQHVTERALIELVLPCIDQSSDDSRNTFASDLVKQMNNIEQQISAVTCGASSKQTGIIAEAPVSKGSNRKGMRGGSAGLARRQVGPAETVPPVPPSPAALRASMSLRLQFLLRLLHIIWADREPTVRNMRHMLASVMLRLLGSRVVHEDADQPLNPRLGFSLKREVESLMDPTTATASGSVDLSGESLFHLLLLVMHGLLSSSQPSWLKSNSCSKSTADYRKDFTVFDREVAESLQNELDRMQLPETIRWRIQTTMPFLFPSIRFPVSCQLPSLPPAALASLQPSVSVSPLHPGNLNPPQRNTIPSTRSNGPGKTKASSLPKDHLEIKPKDLEMDIDPWTLLEDGAGSGPSSSNSAVMGGGDLTNLRASSWLKGAVRVRRMDLTYIGAVDEDS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00218	por	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0006357	biological_process	regulation of transcription by RNA polymerase II
GO:0016592	cellular_component	mediator complex
GO:0003712	molecular_function	transcription coregulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	149.553
	SRR3591706	second leaf	200.737
	SRR3591707	mature leaf	140.456
	SRR3591708	Shoot apex	148.846
	SRR3591709	Stem	145.539
	SRR3591710	White floral bud	24.046
	SRR3591711	White flower	27.307
	SRR3591712	Green floral bud	18.226
	SRR3591713	Yellow flower	2.466
SRP173429	SRR8316895	Juvenile bud stage	37.152
	SRR8316896	Juvenile bud stage	32.735
	SRR8316897	Juvenile bud stage	22.620
	SRR8316894	Third green stage	9.464
	SRR8316900	Third green stage	20.270
	SRR8316901	Third green stage	15.585
	SRR8316898	Complete white stage	1.878
	SRR8316899	Complete white stage	16.202
	SRR8316903	Complete white stage	9.177
	SRR8316902	Silver flowering stage	0.735
	SRR8316904	Silver flowering stage	1.737
	SRR8316905	Silver flowering stage	0.743
	SRR8316906	Gold flowering stage	3.345
	SRR8316907	Gold flowering stage	4.122
	SRR8316908	Gold flowering stage	3.320
SRP132670	SRR6706286	Control	17.110
	SRR6706287	Light intensity 50%	15.128
	SRR6706288	Light intensity 20%	15.780
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.064
	CNS0095593	Slightly white alabastrum(diploid) 2	26.852
	CNS0095594	Slightly white alabastrum(diploid) 3	22.914
	CNS0095595	Whole white alabastrum(diploid) 2	23.723
	CNS0095596	Whole white alabastrum(diploid) 3	14.142
	CNS0095597	Whole white alabastrum(diploid) 4	16.537
	CNS0095598	Silvery flower (diploied) 1	102.129
	CNS0095599	Silvery flower (diploied) 2	126.523
	CNS0095600	Silvery flower (diploied) 3	29.643
	CNS0095601	Golden flower (diploid) 1	112.591
	CNS0095602	Golden flower (diploid) 2	75.199
	CNS0095603	Golden flower (diploid) 3	73.840
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.763
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.173
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.686
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.318
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.378
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.508
	CNS0095610	Silvery flower (tetraploid) 1	9.658
	CNS0095611	Silvery flower (tetraploid) 2	33.544
	CNS0095612	Silvery flower (tetraploid) 3	23.507
	CNS0095613	Golden flower (tetraploid) 1	6.504
	CNS0095614	Golden flower (tetraploid) 2	22.521
	CNS0095615	Golden flower (tetraploid) 3	3.360
CRA001975	CRR073297	Stem 1	47.292
	CRR073298	Stem 2	41.531
	CRR073299	Stem 3	62.515
	CRR073300	Leaf 1	15.583
	CRR073301	Leaf 2	19.021
	CRR073302	Leaf 3	29.722
	CRR073303	Juvenile bud 1	16.610
	CRR073304	Juvenile bud 2	9.330
	CRR073305	Juvenile bud 3	12.821
	CRR073306	Third green 1	4.665
	CRR073307	Third green 2	3.884
	CRR073308	Third green 3	4.007
	CRR073309	Second white 1	12.628
	CRR073310	Second white 2	10.685
	CRR073311	Second white 3	12.647
	CRR073312	Silver flowering 1	9.764
	CRR073313	Silver flowering 2	5.864
	CRR073314	Silver flowering 3	5.745
	CRR073315	Gold flowering 1	345.172
	CRR073316	Gold flowering 2	355.219
	CRR073317	Gold flowering 3	260.533
	CRR073318	Tawny withering 1	62.898
	CRR073319	Tawny withering 2	44.209
	CRR073320	Tawny withering 3	56.799