Gene detail

Detail information of GWHGAAZE002213

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009608623.1	1.2717E-99	PREDICTED: ELMO domain-containing protein A isoform X1 [Nicotiana tomentosiformis]
trEMBL	tr\|A0A067ECB9\|A0A067ECB9_CITSI	2E-97	Uncharacterized protein {ECO:0000313\|EMBL:KDO48862.1} (Fragment)
TAIR10	AT1G03620.1	5E-50	ELMO/CED-12 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	73008990	73011688	+
GWHAAZE00000001	mRNA	73008990	73011688	+
GWHAAZE00000001	exon	73008990	73009089	+
GWHAAZE00000001	exon	73009411	73009520	+
GWHAAZE00000001	exon	73009646	73009714	+
GWHAAZE00000001	exon	73009831	73009946	+
GWHAAZE00000001	exon	73010057	73010111	+
GWHAAZE00000001	exon	73010254	73010392	+
GWHAAZE00000001	exon	73010878	73010925	+
GWHAAZE00000001	exon	73011057	73011235	+
GWHAAZE00000001	exon	73011587	73011688	+
GWHAAZE00000001	CDS	73008990	73009089	+
GWHAAZE00000001	CDS	73009411	73009520	+
GWHAAZE00000001	CDS	73009646	73009714	+
GWHAAZE00000001	CDS	73009831	73009946	+
GWHAAZE00000001	CDS	73010057	73010111	+
GWHAAZE00000001	CDS	73010254	73010392	+
GWHAAZE00000001	CDS	73010878	73010879	+
GWHAAZE00000001	three_prime_UTR	73010880	73010925	+
GWHAAZE00000001	three_prime_UTR	73011057	73011235	+
GWHAAZE00000001	three_prime_UTR	73011587	73011688	+

Transcript Sequence
>GWHTAAZE002217 GTTGACGAAGATGAAATTTATTGGAGGCAAAAGGAGAGTGATGAAGAGTCGTGGTCACATAATTCTGCTCATGTAACATCGCAGTTAGCTCAATGCTTTACTAATGCTATGGTTGGACCACGATCATGGATAGGAGGAACCTTAATCCGCTCCGTCACTAAACGGTTTGCATCTATCAAATTTTTTGACTATCCTCTAACTCCTCTTCAGGAACAAAGACTTCGAAGGCTTCAAGAACGATTGAGTGTGCGTTTTGACGAAACTTGCCCTGACCATCAAGACGCTCTTAGATTATTGTGGAAGGCCGCATACCCAAAAGTTCAGCTTAGAGGTTTGGTATCTGAGCAATGGAAGGACATGGGGTGGCAGGGAACTAATCCATCAACTGACTTCAGGGGCTGTGGTTTTATTTCTCTCGAGAATTTGTTGTTTTTCGCATTGAACTATCCGACTTCTTTCAATAGGTTATTATTCAAAAAAGGTGGAAAGCGAGCAACTTGGGAATATCCATTCGCCGTTGCTGGCATTAACGTATCATTTATGTTGATTCAGATGTTGGATTTGGACTCAGGTTCGCATATTCAAATGTAAAAGCCTAGATGTATACCGGGCATGAATTTTCTGAAGATAATTGAAGAAGATGAAAGTGCTTTCGATAGTCTATACTGTATAGCTTTTGCGATGATGGATGCTCAGTGGCTTTCTATGCGTGCTTCCTATATGGAGTTTAACGTACTCTCTCTCTCTCTCTCTCACACACACACACACACCAAAAAAAAACACGCAGGTGCAAACACCATAATTAGCACAAGATTGGAGGTTTTACAATTAACGCGTATGCAGTTGGAGAGAGAACTATCTTTAGAGGATGTCAACAGAATGCAAGATCTCCCAGCATACAACTTATTGTACCAGTAA

Network for GWHGAAZE002213

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04727.14	ELMO_CED12	76	189	4.70E-35
PF02812.19	ELFV_dehydrog_N	33	159	1.20E-50
PF00208.22	ELFV_dehydrog	176	408	4.70E-77

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00261	GLUD1_2, gdhA	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Nitrogen metabolism	map00910
		Alanine, aspartate and glutamate metabolism	map00250
		Arginine biosynthesis	map00220
		D-Glutamine and D-glutamate metabolism	map00471
		Necroptosis	map04217
		Proximal tubule bicarbonate reclamation	map04964

Gene Ontology

GO term	Ontology	Name
GO:0006520	biological_process	cellular amino acid metabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0016639	molecular_function	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.531
	SRR3591706	second leaf	0.562
	SRR3591707	mature leaf	1.641
	SRR3591708	Shoot apex	2.002
	SRR3591709	Stem	13.265
	SRR3591710	White floral bud	2.755
	SRR3591711	White flower	1.851
	SRR3591712	Green floral bud	4.059
	SRR3591713	Yellow flower	2.326
SRP173429	SRR8316895	Juvenile bud stage	1.813
	SRR8316896	Juvenile bud stage	4.226
	SRR8316897	Juvenile bud stage	0.515
	SRR8316894	Third green stage	1.531
	SRR8316900	Third green stage	4.679
	SRR8316901	Third green stage	4.613
	SRR8316898	Complete white stage	0.655
	SRR8316899	Complete white stage	3.093
	SRR8316903	Complete white stage	0.909
	SRR8316902	Silver flowering stage	1.036
	SRR8316904	Silver flowering stage	2.396
	SRR8316905	Silver flowering stage	0.604
	SRR8316906	Gold flowering stage	2.859
	SRR8316907	Gold flowering stage	2.273
	SRR8316908	Gold flowering stage	0.826
SRP132670	SRR6706286	Control	2.532
	SRR6706287	Light intensity 50%	3.111
	SRR6706288	Light intensity 20%	3.844
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.083
	CNS0095593	Slightly white alabastrum(diploid) 2	1.513
	CNS0095594	Slightly white alabastrum(diploid) 3	1.995
	CNS0095595	Whole white alabastrum(diploid) 2	4.809
	CNS0095596	Whole white alabastrum(diploid) 3	2.816
	CNS0095597	Whole white alabastrum(diploid) 4	2.555
	CNS0095598	Silvery flower (diploied) 1	2.394
	CNS0095599	Silvery flower (diploied) 2	1.554
	CNS0095600	Silvery flower (diploied) 3	2.598
	CNS0095601	Golden flower (diploid) 1	2.552
	CNS0095602	Golden flower (diploid) 2	2.491
	CNS0095603	Golden flower (diploid) 3	2.640
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.538
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.907
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.625
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.895
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.700
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.416
	CNS0095610	Silvery flower (tetraploid) 1	1.059
	CNS0095611	Silvery flower (tetraploid) 2	1.128
	CNS0095612	Silvery flower (tetraploid) 3	0.276
	CNS0095613	Golden flower (tetraploid) 1	0.642
	CNS0095614	Golden flower (tetraploid) 2	0.912
	CNS0095615	Golden flower (tetraploid) 3	0.300
CRA001975	CRR073297	Stem 1	3.388
	CRR073298	Stem 2	2.940
	CRR073299	Stem 3	0.855
	CRR073300	Leaf 1	3.809
	CRR073301	Leaf 2	2.506
	CRR073302	Leaf 3	0.733
	CRR073303	Juvenile bud 1	1.711
	CRR073304	Juvenile bud 2	0.925
	CRR073305	Juvenile bud 3	1.796
	CRR073306	Third green 1	0.225
	CRR073307	Third green 2	0.252
	CRR073308	Third green 3	0.213
	CRR073309	Second white 1	0.469
	CRR073310	Second white 2	0.785
	CRR073311	Second white 3	1.054
	CRR073312	Silver flowering 1	0.528
	CRR073313	Silver flowering 2	0.647
	CRR073314	Silver flowering 3	0.948
	CRR073315	Gold flowering 1	1.404
	CRR073316	Gold flowering 2	0.590
	CRR073317	Gold flowering 3	0.588
	CRR073318	Tawny withering 1	9.000
	CRR073319	Tawny withering 2	6.622
	CRR073320	Tawny withering 3	9.487