Detail information of GWHGAAZE002216


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010242003.11.7458E-163PREDICTED: protochlorophyllide reductase-like [Nelumbo nucifera]
COGYP_007064242.12E-81light-dependent protochlorophyllide reductase
Swissprottr|Q01289|POR_PEA5E-151Protochlorophyllide reductase, chloroplastic (Precursor)
trEMBLtr|E0CSP0|E0CSP0_VITVI5E-162Putative uncharacterized protein {ECO:0000313|EMBL:CBI20339.3}
TAIR10AT5G54190.12E-92protochlorophyllide oxidoreductase A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene7305527273061995-
GWHAAZE00000001mRNA7305527273061995-
GWHAAZE00000001exon7305527273055427-
GWHAAZE00000001exon7305831273058670-
GWHAAZE00000001exon7306021373060362-
GWHAAZE00000001exon7306043073060565-
GWHAAZE00000001exon7306176073061858-
GWHAAZE00000001exon7306193973061995-
GWHAAZE00000001CDS7306193973061995-
GWHAAZE00000001CDS7306176073061858-
GWHAAZE00000001CDS7306043073060565-
GWHAAZE00000001CDS7306021373060362-
GWHAAZE00000001CDS7305831273058670-
GWHAAZE00000001CDS7305527273055427-
Transcript Sequence

Network for GWHGAAZE002216

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01058.23Oxidored_q61172261.20E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00218por Metabolic pathways map01100
Metabolic pathwaysmap01100
Biosynthesis of secondary metabolitesmap01110
Oxidative phosphorylationmap00190
Porphyrin and chlorophyll metabolismmap00860
Retrograde endocannabinoid signalingmap04723
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0051536molecular_functioniron-sulfur cluster binding
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
GO:0048038molecular_functionquinone binding
GO:0051539molecular_function4 iron, 4 sulfur cluster binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf168.293
SRR3591706second leaf264.590
SRR3591707mature leaf180.913
SRR3591708Shoot apex200.190
SRR3591709Stem182.734
SRR3591710White floral bud28.092
SRR3591711White flower33.722
SRR3591712Green floral bud16.896
SRR3591713Yellow flower4.674
SRP173429 SRR8316895Juvenile bud stage 36.550
SRR8316896Juvenile bud stage 31.762
SRR8316897Juvenile bud stage 30.578
SRR8316894Third green stage 9.373
SRR8316900Third green stage 17.682
SRR8316901Third green stage 13.387
SRR8316898Complete white stage 1.121
SRR8316899Complete white stage 14.454
SRR8316903Complete white stage 9.193
SRR8316902Silver flowering stage0.837
SRR8316904Silver flowering stage1.056
SRR8316905Silver flowering stage0.307
SRR8316906Gold flowering stage 2.448
SRR8316907Gold flowering stage 3.728
SRR8316908Gold flowering stage 3.218
SRP132670SRR6706286Control16.590
SRR6706287Light intensity 50%14.900
SRR6706288Light intensity 20%13.308
CNP0000432CNS0095592Slightly white alabastrum(diploid) 137.737
CNS0095593Slightly white alabastrum(diploid) 235.192
CNS0095594Slightly white alabastrum(diploid) 334.906
CNS0095595Whole white alabastrum(diploid) 228.159
CNS0095596Whole white alabastrum(diploid) 314.739
CNS0095597Whole white alabastrum(diploid) 422.764
CNS0095598Silvery flower (diploied) 1109.783
CNS0095599Silvery flower (diploied) 2117.451
CNS0095600Silvery flower (diploied) 329.547
CNS0095601Golden flower (diploid) 1136.934
CNS0095602Golden flower (diploid) 275.741
CNS0095603Golden flower (diploid) 369.534
CNS0095604Slightly white alabastrum(tetraploid) 139.867
CNS0095605Slightly white alabastrum(tetraploid) 241.472
CNS0095606Slightly white alabastrum(tetraploid) 365.729
CNS0095607Whole white alabastrum(tetraploid) 137.486
CNS0095608Whole white alabastrum(tetraploid) 219.810
CNS0095609Whole white alabastrum(tetraploid) 323.669
CNS0095610Silvery flower (tetraploid) 113.551
CNS0095611Silvery flower (tetraploid) 236.633
CNS0095612Silvery flower (tetraploid) 326.727
CNS0095613Golden flower (tetraploid) 17.980
CNS0095614Golden flower (tetraploid) 225.195
CNS0095615Golden flower (tetraploid) 34.156
CRA001975CRR073297Stem 127.295
CRR073298Stem 225.998
CRR073299Stem 341.686
CRR073300Leaf 110.136
CRR073301Leaf 211.919
CRR073302Leaf 312.386
CRR073303Juvenile bud 18.702
CRR073304Juvenile bud 24.897
CRR073305Juvenile bud 37.102
CRR073306Third green 13.204
CRR073307Third green 21.132
CRR073308Third green 32.507
CRR073309Second white 19.307
CRR073310Second white 24.763
CRR073311Second white 37.889
CRR073312Silver flowering 14.609
CRR073313Silver flowering 25.690
CRR073314Silver flowering 34.192
CRR073315Gold flowering 1215.840
CRR073316Gold flowering 2203.182
CRR073317Gold flowering 3159.157
CRR073318Tawny withering 144.018
CRR073319Tawny withering 247.219
CRR073320Tawny withering 341.019